Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1271 ATGATTGTTGGTGGTAGTGAAACGACGTCGTTAGCGAGAGTGAAACGAGAGCAAGCCACGTTATTCAAAGACAACGCTGAAGAAGAAGTTTTCAGCGAAAGTAGAAACTCAGTAGTTACAGAAGAGCGTGTTACTGGTAGTAATAATACTGATATGAGAGAAGGTATTGGTATAAAAGAAGAGGTTATTGATGATATTGGTGTGAATGGTTCATCATCTTCATCGTCGATAAATGAGGTGAGTCCACCACCGTTTTTGAAGAAGACATTTGAAATGGTGGAGGATCCAGAAACTGACACGATTGTAGGGTGGAGTGAAAATCGTGATAGCTTCATTGTTTTTGATTCTCATCACTTCTCAAAACTACTTCTGCCAAAGTATTTCAAGCACAGCAATTTCTCTAGCTTCATTCGCCAGCTCAATACTTATGGCTTTAGGAAGGTTGATTCAGAACGATGGGAGTTTGCAAATGAAGGATTTCAAGGAGGGAAGAAACATTTACTGAAAAACATTAGGAGAAGAAGTAAGTATAACAAACAGCATCATGGAACATTAAGTTCAATGAAACCTGGTCTTGAGGCTGAAGTTGAGAAACTAAAGAAAGACCAAAACATAATGAAACTTGAAATCCTAAAGCTGAGACAACAGCAAGAAAATTCTCACATGCAACTCACAAATGTTCAGGAGAGAATTCACACTGCAGAAGTAAAACATAATCAGATGATAGTTTTTCTCATTAGAATGTGTAGAAAGCCATTTTTTGTTGATCAGTTACTCCACACTGTTAAGAGAAAAAGAGAGCTTGATGGAAATGACATGGTTAAGAAACACAGATTACTTGAAACACAGTGCCCTATGAACTTCCTTAATGCCATGGAGACAAGTTCCCATGATGTTTGTTATAGAGACCAAGGTCATGAACATTTTACTACATTGCAATCTGACATCATTGGACTTTTGTCTGAAAGTGTGAACATCAATAACATGGGTATGGATGATGAATTATGTAGTCATGTGCAAGGATTAAGGGCATATGGTTGTAGGACAAATGGACAGGATGTTTCTTCTGATTATCATGTTGTGTCAGAGAAACTAATGAGGGAAAATTCAGTTGTTGATGAAGAACAACTAGATGTGAATGACTCAAATATCTATCTTGAATTGGAGGATTTGATAAGTAAACCAGCTGAATGGGTTGGATCAGAAAGTGGATTAGTGGGACAAACTAGTTGA 1233 0.3739 MIVGGSETTSLARVKREQATLFKDNAEEEVFSESRNSVVTEERVTGSNNTDMREGIGIKEEVIDDIGVNGSSSSSSINEVSPPPFLKKTFEMVEDPETDTIVGWSENRDSFIVFDSHHFSKLLLPKYFKHSNFSSFIRQLNTYGFRKVDSERWEFANEGFQGGKKHLLKNIRRRSKYNKQHHGTLSSMKPGLEAEVEKLKKDQNIMKLEILKLRQQQENSHMQLTNVQERIHTAEVKHNQMIVFLIRMCRKPFFVDQLLHTVKRKRELDGNDMVKKHRLLETQCPMNFLNAMETSSHDVCYRDQGHEHFTTLQSDIIGLLSESVNINNMGMDDELCSHVQGLRAYGCRTNGQDVSSDYHVVSEKLMRENSVVDEEQLDVNDSNIYLELEDLISKPAEWVGSESGLVGQTS* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1271 410 SMART hsfneu3 81 174 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan1g1271 410 Coils Coil 196 216 - -
Lan1g1271 410 Gene3D - 77 175 IPR036388 -
Lan1g1271 410 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 70 397 IPR027725 -
Lan1g1271 410 Pfam HSF-type DNA-binding 85 174 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan1g1271 410 ProSitePatterns HSF-type DNA-binding domain signature. 124 148 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan1g1271 410 SUPERFAMILY "Winged helix" DNA-binding domain 81 174 IPR036390 -
Lan1g1271 410 PRINTS Heat shock factor (HSF) domain signature 85 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan1g1271 410 PRINTS Heat shock factor (HSF) domain signature 123 135 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan1g1271 410 PRINTS Heat shock factor (HSF) domain signature 136 148 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan1g1271 410 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-9 70 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1271 Lan-Chr1 22516912 22519448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1271 77 398 HSF AT2G26150 40.240 2.56e-74 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lan1g1271 HSF_DNA-bind 3.6e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1271 K09419 - gmx:100818430 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0999 12 16695726 16697958 Lan1g1271 1 22516912 22519448 LSH