Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1269 ATGCACCCCATGGATGGTATCTTCTCCCTCTCTGAAGCCACTAGAACTGATTTTCTCAGCGCTCTAGTACTGCACTTGTCTGGCTGCGCTTACATTTGTTTGTGGCGATATGATTCCTGTTTAACCAATCGTTTGTTGTTCTTGGATGGATTCTACAACGTAAACAATCAACCAAACTCTTCTTTGGCACGTAATAGTGTAGCTGAAGAGCTTTTTAACCTATACCAGAGTTTAACATTCGATGTTAATGTTGACAGTATTCCTGGACTAGCTTTCAGGAACCACAATCCCTACCTAGAGCTGCAACAATTGGATCTTCTAAGACTTGTATCTACAGAAATACAAGTACAATTCTTTAAGGAAGCAAGGATTAAGACTGCTGTTTTCATGGGGTGCAGTAAAGGTGAAATTGAGCTTGGGTTCACCAATATGTCTCAAGTTGACATTGAAGCAGCACTTAGGGGTTTATTTCCAGAAGATTTTTTTAGACAGACCCAAAGAATTAACTATCAGAATCCACATTCATCATCTTCATCCTATTCTATATCATTATCCACTGGTAGCCCAGAATGTTCATCCCTATTAATCAATAATATCCCAGTTACTTCCATGTCTCATCACTTTCCTGAAACCCTTGGATCAATGGTTCCCAAAATGCAACCCATAGAAGCTAGGCCAATACACCAACAAGCCATTCAAGCATTAGGTCAAGTTATTCCATGTCATTTTGCCACACCAGAGGTTGAACATGATGATGCTATAATAAGAGCAATGATTCATGTTATATCTTCTTCAAGTACTTCTGATCACAAACATCGAATACCACAGCAAAATTTGCCTTATACTTCTTCTTCACTGGTTCATCCAGTAAATATTACTGCTTTCAAGAAGTATAGTGCAGATAATAAAGGCCCAGATCCACATATAAGATCCAATCCTCCCAGACAAAGCTTGCTAAAGAAATCATTTGCATGTTCTAGAAGCTTAAATTCATTGAGAATCAGAGAGCGGATTCAAGAAGCTGCTCGTTTCACTAGTACTCAGCAACAACGTATGATGTCAGAGCGAAGAAGGCGTGAGAAACTCAATGAGAATTTTCAGGCACTCAGAGAATTACTTCCTCCCAAAACTAAGAAAGACAAAGCATCTATACTTACAGCAGCAAAGGAGAAATTGAAATCTTTGACGGCTGAAATTGAAAAGTTTAACATAAGAAATCAACAGTTGACAACATTTCTGTCAACCATTGAAGCCAACGCTAGTAATAGTAACTTCTCAAATGAGCAATTGAAAATTCGAGTTTCAAATGTACCACAATCGAGCTTATCAGAAGAGAGAATGGTGGACTTGCACGTAACTGTAAGAGGAGAAAGCTCTCAAGTTGATATATCTATTCGCTTATTGGAATTCCTTAAACGGATTCAGAATTTGAGTTTGATTTGCATGGAAGCTAACACACATGTTACAGAAGGGACAACAATTAATCAATTAACCTTCAGGATAGGGATTATTGAGGGAAGTGCATGGAACGAGTGTACTTTCGTGGAAGCAGTGAGAAGAATAGTTGCTGACCTACTACATGGACACGTGGGAAAATAA 1599 0.3859 MHPMDGIFSLSEATRTDFLSALVLHLSGCAYICLWRYDSCLTNRLLFLDGFYNVNNQPNSSLARNSVAEELFNLYQSLTFDVNVDSIPGLAFRNHNPYLELQQLDLLRLVSTEIQVQFFKEARIKTAVFMGCSKGEIELGFTNMSQVDIEAALRGLFPEDFFRQTQRINYQNPHSSSSSYSISLSTGSPECSSLLINNIPVTSMSHHFPETLGSMVPKMQPIEARPIHQQAIQALGQVIPCHFATPEVEHDDAIIRAMIHVISSSSTSDHKHRIPQQNLPYTSSSLVHPVNITAFKKYSADNKGPDPHIRSNPPRQSLLKKSFACSRSLNSLRIRERIQEAARFTSTQQQRMMSERRRREKLNENFQALRELLPPKTKKDKASILTAAKEKLKSLTAEIEKFNIRNQQLTTFLSTIEANASNSNFSNEQLKIRVSNVPQSSLSEERMVDLHVTVRGESSQVDISIRLLEFLKRIQNLSLICMEANTHVTEGTTINQLTFRIGIIEGSAWNECTFVEAVRRIVADLLHGHVGK* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1269 532 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 346 395 IPR011598 GO:0046983
Lan1g1269 532 Coils Coil 385 405 - -
Lan1g1269 532 Gene3D - 345 418 IPR036638 GO:0046983
Lan1g1269 532 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 4 525 IPR044658 -
Lan1g1269 532 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 4 525 - -
Lan1g1269 532 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 349 411 IPR036638 GO:0046983
Lan1g1269 532 Coils Coil 352 372 - -
Lan1g1269 532 CDD bHLH_AtbHLH_like 360 401 IPR045239 -
Lan1g1269 532 Pfam Helix-loop-helix DNA-binding domain 353 395 IPR011598 GO:0046983
Lan1g1269 532 SMART finulus 352 401 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1269 Lan-Chr1 22498221 22501956 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1269 4 527 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 36.898 1.01e-80 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan1g1269 HLH 8.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1269 - - lang:109361243 1018.45