Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1268 ATGCACCCCATGGATGGTATCTTCTCCCTCTCTGAAGCCACTAGAACTGATTTTCTCAGCGCTCTAGTACTGCACTTGTCTGGCTGCGCTTACATTTGTTTGTGGCGATATGATTCCTGTTTAACCAATCGTTTGTTGTTCTTGGATGGATTCTACAACGTAAACAATCAACCAAACTCTTCTTTGGCACGTAATAGTGTAGCTGAAGAGCTTTTTAACCTATACCAGAGTTTAACATTCGATGTTAATGTTGACAGTATTCCTGGACTAGCTTTCAGGAACCACAATCCCTACCTAGAGCTGCAACAATTGGATCTTCTAAGACTTGTATCTACAGAAATACAAGTACAATTCTTTAAGGAAGCAAGGATTAAGACTGCTGTTTTCATGGGGTGCAGTAAAGGTGAAATTGAGCTTGGGTTCACCAATATGTCTCAAGTTGACATTGAAGCAGCACTTAGGGGTTTATTTCCAGAAGATTTTTTTAGACAGACCCAAAGAATTAACTATCAGAATCCACATTCATCATCTTCATCCTATTCTATATCATTATCCACTGGTAGCCCAGAATGTTCATCCCTATTAATCAATAATATCCCAGTTACTTCCATGTCTCATCACTTTCCTGAAACCCTTGGATCAATGGTTCCCAAAATGCAACCCATAGAAGCTAGGCCAATACACCAACAAGCCATTCAAGCATTAGGTCAAGTTATTCCATGTCATTTTGCCACACCAGAGGTTGAACATGATGATGCTATAATAAGAGCAATGATTCATGTTATATCTTCTTCAAGTACTTCTGATCACAAACATCGAATACCACAGCAAAATTTGCCTTATACTTCTTCTTCACTGGTTCATCCAGTAAATATTACTGCTTTCAAGAAGTATAGTGCAGATAATAAAGGCCCAGATCCACATATAAGATCCAATCCTCCCAGACAAAGCTTGCTAAAGAAATCATTTGCATGTTCTAGAAGCTTAAATTCATTGAGAATCAGAGAGCGGATTCAAGAAGCTGCTCGTTTCACTAGTACTCAGCAACAACGTATGATGTCAGAGCGAAGAAGGCGTGAGAAACTCAATGAGAATTTTCAGGCACTCAGAGAATTACTTCCTCCCAAAACTAAGAAAGACAAAGCATCTATACTTACAGCAGCAAAGGAGAAATTGAAATCTTTGACGGCTGAAATTGAAAAGTTTAACATAAGAAATCAACAGTTGACAACATTTCTGTCAACCATTGAAGCCAACGCTAGTAATAGTAACTTCTCAAATGAGCAATTGAAAATTCGAGTTTCAAATGTACCACAATCGAGCTTATCAGAAGAGAGAATGGTGGACTTGCACGTAACTGTAAGAGGAGAAAGCTCTCAAGTTGATATATCTATTCGCTTATTGGAATTCCTTAAACGGATTCAGAATTTGAGTTTGATTTGCATGGAAGCTAACACACATGTTACAGAAGGGACAACAATTAATCAATTAACCTTCAGGATAGGGATTATTGAGGGAAGTGCATGGAACGAGTGTACTTTCGTGGAAGCAGTGAGAAGAATAGTTGCTGACCTACTACATGGACACGAGACAGGAAGTAATGTTGCTTATATCCGCTCTCCTTTGTTTTGGTTTATCGATATTTATAATATATAA 1656 0.3829 MHPMDGIFSLSEATRTDFLSALVLHLSGCAYICLWRYDSCLTNRLLFLDGFYNVNNQPNSSLARNSVAEELFNLYQSLTFDVNVDSIPGLAFRNHNPYLELQQLDLLRLVSTEIQVQFFKEARIKTAVFMGCSKGEIELGFTNMSQVDIEAALRGLFPEDFFRQTQRINYQNPHSSSSSYSISLSTGSPECSSLLINNIPVTSMSHHFPETLGSMVPKMQPIEARPIHQQAIQALGQVIPCHFATPEVEHDDAIIRAMIHVISSSSTSDHKHRIPQQNLPYTSSSLVHPVNITAFKKYSADNKGPDPHIRSNPPRQSLLKKSFACSRSLNSLRIRERIQEAARFTSTQQQRMMSERRRREKLNENFQALRELLPPKTKKDKASILTAAKEKLKSLTAEIEKFNIRNQQLTTFLSTIEANASNSNFSNEQLKIRVSNVPQSSLSEERMVDLHVTVRGESSQVDISIRLLEFLKRIQNLSLICMEANTHVTEGTTINQLTFRIGIIEGSAWNECTFVEAVRRIVADLLHGHETGSNVAYIRSPLFWFIDIYNI* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1268 551 Pfam Helix-loop-helix DNA-binding domain 353 395 IPR011598 GO:0046983
Lan1g1268 551 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 346 395 IPR011598 GO:0046983
Lan1g1268 551 Coils Coil 385 405 - -
Lan1g1268 551 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 4 525 IPR044658 -
Lan1g1268 551 Gene3D - 345 418 IPR036638 GO:0046983
Lan1g1268 551 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 4 525 - -
Lan1g1268 551 Coils Coil 352 372 - -
Lan1g1268 551 CDD bHLH_AtbHLH_like 360 401 IPR045239 -
Lan1g1268 551 SMART finulus 352 401 IPR011598 GO:0046983
Lan1g1268 551 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 349 411 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1268 Lan-Chr1 22491412 22495504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1268 4 527 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 36.898 3.12e-80 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan1g1268 HLH 8.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1268 - - lang:109361243 1064.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1268 1 22491412 22495504 Lan15g0145 15 1656699 1662014 PCT
Lan1g1268 1 22491412 22495504 Lan14g0133 14 1643156 1647525 PCT
Lan15g0145 15 1656699 1662014 Lan1g1268 1 22491412 22495504 PCT
Lan14g0133 14 1643156 1647525 Lan1g1268 1 22491412 22495504 PCT