Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1259 ATGGGAAACTGTTGTAGCATTCCAAACCATGATCCTCATCCACCCACCACCAATCAATCAGGTAGCAGGCAATTTGTTGCTAGTGTCAGCAATACCAAATTATCACAAAATGGCAATTCTACTTCACTTGGGTGTGGCAACAACTCTGGGCAAATCAGCCACTTCTTTGGGCCAAGTAGCAGTAATAACACAAGCACATCTCTTTGGGGCTCGGAAAATAGCCAAGTCTCTCGAACAAGAGAGGAAGAGGAGTTCCCTAATGGGCAGATCTTGGATGTTGCAAACTTGACAGTATTTACTTTGGCGGAACTGCGGGCAGCAACTAAGAATTTCAGACGCGATAATTTGTTAGGAGAGGGAGGTTTTGGTAGAGTATACAGGGGTCGGATTAAGGAGAGAATAGGTTCGAGTAGTGGTAAGAAATTGACTGTTGCCATTAAGGTATTGAATTCTGATAGCATTCAAGGATTTGAGGAATGGCAGACGGAGGTGAATTTCTTAGGAAGGCTTCCTCATCCCAACCTTGTAAAGTTGTTGGGATTCGGGCGAGAGGGTAGTAAACTATTCCTCGTGTATGAGTATATGAAACGCAGAAGCTTAGATAACCACATATTTGGAAGTGCAAGTGTCAAACCACTTTCCTGGGACACAAGGCTAAAAATTATGATCGGAGCAGCAAAGGGATTGGCTTTTCTTCACACCTTAGAGAATAGAATTATATACAGAGATTTGAAGCCGTCGAATATACTACTTGACATGACATATACAGCAAAATTAGCCGATTTTGGCTTAGCCAAATCTATTCCATATCCTCATCTGTCTCATGTAACAACAAGGATTAAGGGAACAAGTGGCTATGCTGCTCCTGAATACCTTAGCACAGGTCATCTGTATGTGAAAAGTGACGTGTATGCATTTGGGATTGTTTTATTAGAGATGCTGACTGGCTCGCGAATACGTGACATAATGCACGTCTCTCAGCCACAGTCCTTACAAAATTGGGTTAAATCAACTCTGTTAAATAGAGTGAAAATTAAAAGCACTATGGATTCAAGATTGAAAGGCAAGTATCCACAGAAATTAGCTTCAGCAGTTGCTCGAATTTCTTACAAATGCATACAAACAGATGTCAAAGTTAGGCCATCAATGGTAGAAGTTGTTGAAACACTGGAAAAGATTGAAGCAGCAAATGAGAAACCAGCTGACAGCATGAAGCAAGGACTCGTTCCCGGGCAGTCCAACAAAATCGATAGCCAGATGATGGTTAATTGA 1272 0.4175 MGNCCSIPNHDPHPPTTNQSGSRQFVASVSNTKLSQNGNSTSLGCGNNSGQISHFFGPSSSNNTSTSLWGSENSQVSRTREEEEFPNGQILDVANLTVFTLAELRAATKNFRRDNLLGEGGFGRVYRGRIKERIGSSSGKKLTVAIKVLNSDSIQGFEEWQTEVNFLGRLPHPNLVKLLGFGREGSKLFLVYEYMKRRSLDNHIFGSASVKPLSWDTRLKIMIGAAKGLAFLHTLENRIIYRDLKPSNILLDMTYTAKLADFGLAKSIPYPHLSHVTTRIKGTSGYAAPEYLSTGHLYVKSDVYAFGIVLLEMLTGSRIRDIMHVSQPQSLQNWVKSTLLNRVKIKSTMDSRLKGKYPQKLASAVARISYKCIQTDVKVRPSMVEVVETLEKIEAANEKPADSMKQGLVPGQSNKIDSQMMVN* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1259 423 SUPERFAMILY Protein kinase-like (PK-like) 96 394 IPR011009 -
Lan1g1259 423 MobiDBLite consensus disorder prediction 407 423 - -
Lan1g1259 423 MobiDBLite consensus disorder prediction 10 24 - -
Lan1g1259 423 SMART serkin_6 111 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan1g1259 423 ProSitePatterns Protein kinases ATP-binding region signature. 117 147 IPR017441 GO:0005524
Lan1g1259 423 Gene3D Phosphorylase Kinase; domain 1 81 194 - -
Lan1g1259 423 MobiDBLite consensus disorder prediction 54 84 - -
Lan1g1259 423 Gene3D Transferase(Phosphotransferase) domain 1 195 413 - -
Lan1g1259 423 MobiDBLite consensus disorder prediction 54 75 - -
Lan1g1259 423 PANTHER OS01G0588500 PROTEIN-RELATED 12 406 - -
Lan1g1259 423 MobiDBLite consensus disorder prediction 401 423 - -
Lan1g1259 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Lan1g1259 423 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-RLCK-VIIA-2 FAMILY-RELATED 12 406 - -
Lan1g1259 423 Pfam Protein kinase domain 112 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan1g1259 423 MobiDBLite consensus disorder prediction 1 24 - -
Lan1g1259 423 ProSiteProfiles Protein kinase domain profile. 111 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1259 Lan-Chr1 22425134 22428257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1259 73 390 Glycoside Hydrolase AT3G07070 43.125 1.36e-81 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lan1g1259 Pkinase 4.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1259 - - gmx:100813304 542.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1013 12 16812937 16816007 Lan1g1259 1 22425134 22428257 LSH