Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1238 TGTTTTCAGGAACGCATTCCTATTGAAGAGGTGTTCCAGCAATGGAAATGTTCCAGAGAAGGTTTGTCTTCGGACGAAGGAAACAACAGGCTTCAACTCTTTGGGCCAAACAAACTAGAGGAGAAAAAGGAAAGCAAAATTCTCAAGTTTCTTGGGTTCATGTGGAATCCCCTGTCATGGGTCATGGAAGCTGCAGCAATTATGGCAATTGCTCTTGCAAATGGCGACGGGAAGCCCCCGGATTGGCAAGATTTTGTTGGTATTATTTGCTTGTTGGTGATCAACTCCACCATCAGTTTCATCGAAGAAAACAATGCCGGAAATGCTGCTGCTGCCCTTATGGCTGGTCTTGCTCCCAAGACAAAGGTTCTTAGAGATGGTAGATGGAGTGAGGAAGAGGCTGCAATTCTAGTCCCTGGAGACATCATAAGCATCAAACTAGGTGATATAGTTCCTGCTGATGCTCGTCTTCTTGAGGGTGATCCTTTGAAGATTGATCAATCTGCTCTGACTGGAGAGTCACTTCCCGTGAGTAAAAATCCCGGGGATGAAGTTTTCTCTGGCTCAACTTGTAAACAAGGTGAAATTGAAGCTGTTGTCTTTGCAACTGGTGTCCACACATTTTTCGGGAAAGCAGCTCACTTGGTGGATAGTACCAACCAAGTTGGACATTTCCAAAAAGTGCTTACGGCAATTGGAAACTTCTGTATTTGTTCCATTGCAGTTGGTATGTTGGCGGAGATCATTGTCATGTACCCAATTCAGCACCGCAAGTACAGAGATGGAATTGACAACCTATTGGTCCTCTTGATTGGAGGAATTCCCATTGCTATGCCCACTGTGTTGTCCGTGACAATGGCCATTGGTTCTCACAGGCTCTCCCAACAGGGTGCTATCACTAAGCGAATGACTGCCATTGAAGAAATGGCTGGTATGGATGTCCTCTGCAGTGACAAGACAGGGACTCTCACTCTTAACAAGCTCAGTGTTGACAAAAATTTGATTGAGGTCTTTGCGTCGGGGGTTGACAAGGAACATGTGATGCTTCTTGCTGCAAGGGCTTCCAGGACTGAAAACCAGGATGCAATAGATACTGCCATTGTTGGAATGCTTGCTGACCCAAAAGAGGCAAGGGCTGGGATAAGGGAAGTGCACTTCTTACCATTCAATCCTAATGATAAAAGAACTGCTTTGACTTACATTGATGCTTATGGAAACTGGCACCGGGCAAGCAAAGGTGCTCCCGAGCAGATTGTTACCCTGTGTAAGCTCAGGCCAGATGCTACAAAGAAGGCTCATGCTATTATTGACAAGTTTGCAGAGAGAGGGTTGCGTTCATTGGCTGTTGCTAGACAGGAAGTTCCTGAGCAAACAAAAGAAAGTGCTGGTGGTCCATGGGAATTTGTTGGTTTGCTCCCACTTTTTGACCCCCCTAGACATGACAGTGGTGAAACTATTAGCAAAGCTCTTAATCTTGGTGTAAATGTCAAGATGATTACAGGTGATCAACTTGCCATAGCTAAGGAGACTGGCCGGAGACTTGGGATGGGAACAAATATGTACCCATCTGCTTCCTTGCTTGGTCAAGACAAAAATTCAAATGTTGCTGCAATTCCAGTCGAAGAGTTGATTGAGAAGGCGGATGGGTTCGCTGGAGTATTTCCAGAGCACAAATATGAAATCGTAAGGAAATTGCAAGAGATGAAGCACATTTGTGGAATGACTGGAGATGGTGTCAATGATGCCCCTGCTTTGAAGAGGGCTGATATTGGAATTGCTGTTGCTGATGCTACTGATGCTGCAAGAGGTGCTTCTGATATTGTCTTGACAGAACCTGGATTGAGTGTTATTATTAGTGCAGTGTTAACTAGCAGAGCAATTTTCCAAAGAATGAAGAACTACACGATCTATGCAGTATCCATCACTATCCGTATAGTGCTTGGCTTCCTACTTATTGCACTGATCTGGAAATTCGACTTCTCTCCTTTCATGGTTTTGATTATTGCCATTCTTAATGATGGAACCATCATGACAATTTCAAAGGATCGCGTCGTTCCATCTCCCTTGCCTGATAGCTGGAAACTACAAGAAATATTTGCTACTGGCGTTGTGCTTGGAAGTTACTTGGCAGTCATGACCGTCATATTTTTCTGGGCAATGAAAGAAAATACTTTTTTCCCGGAAAAATTTAACGTTAGGCACCTGAATCACGATGAAATGATGTCTGCTTTGTATCTACAAGTCAGTATAGTGAGCCAGGCTCTGATATTTGTAACTCGTTCTAGAACCTGGTCATTCCTTGAACGCCCTGGATTGCTGTTAGTGATTGCTTTTATTATTGCTCAATTGATTGCTACACTCATTGCAGTATATGCTGATTGGAGCTTTGCAAAGGTCCAAGGAATTGGTTGGGGTTGGGCTGGAGTCATATGGCTCTACAGTATTATCTTTTATTTTCCTCTCGACATAATTAAGTTTGCCATCCGTTACGGGTTGAGCGGCAAGGCATGGCAAAACATGCTACAAAACAAGACTGCCTTCACCACGAAGAAAGACTACGGTAAAGAGGAGAGGGAAGCTCAGTGGGCTACAGCTCAGAGAACCTTGCATGGACTTCAACCACCACAAGAATCTTCCAATATTTTCAATGATAAGAACAATTACATAGAACTCAGTGAGATTGCTGAACAAGCAAAGAGAAGAGCTGAAGTTGCAAGGCTTCGTGAGCTACACACAGTTAAGGAACATGTTGAGTCTGTGGTAAAGCTAAAAGGTCTGGATATTGATACAATCCAGCAGCACTACACTGTGTGA 2814 0.4392 CFQERIPIEEVFQQWKCSREGLSSDEGNNRLQLFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIALANGDGKPPDWQDFVGIICLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWSEEEAAILVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVSKNPGDEVFSGSTCKQGEIEAVVFATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMLAEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFASGVDKEHVMLLAARASRTENQDAIDTAIVGMLADPKEARAGIREVHFLPFNPNDKRTALTYIDAYGNWHRASKGAPEQIVTLCKLRPDATKKAHAIIDKFAERGLRSLAVARQEVPEQTKESAGGPWEFVGLLPLFDPPRHDSGETISKALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSASLLGQDKNSNVAAIPVEELIEKADGFAGVFPEHKYEIVRKLQEMKHICGMTGDGVNDAPALKRADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFLLIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVVPSPLPDSWKLQEIFATGVVLGSYLAVMTVIFFWAMKENTFFPEKFNVRHLNHDEMMSALYLQVSIVSQALIFVTRSRTWSFLERPGLLLVIAFIIAQLIATLIAVYADWSFAKVQGIGWGWAGVIWLYSIIFYFPLDIIKFAIRYGLSGKAWQNMLQNKTAFTTKKDYGKEEREAQWATAQRTLHGLQPPQESSNIFNDKNNYIELSEIAEQAKRRAEVARLRELHTVKEHVESVVKLKGLDIDTIQQHYTV* 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1238 937 Pfam E1-E2 ATPase 118 295 - -
Lan1g1238 937 SMART Cation_ATPase_N_a_2 2 74 IPR004014 -
Lan1g1238 937 PANTHER PLASMA MEMBRANE ATPASE 4 917 - -
Lan1g1238 937 Gene3D - 119 203 - -
Lan1g1238 937 PANTHER CALCIUM-TRANSPORTING ATPASE 4 917 - -
Lan1g1238 937 Gene3D - 886 937 - -
Lan1g1238 937 SUPERFAMILY Calcium ATPase, transmembrane domain M 5 830 IPR023298 -
Lan1g1238 937 Pfam haloacid dehalogenase-like hydrolase 312 589 - -
Lan1g1238 937 Pfam Cation transporter/ATPase, N-terminus 6 68 IPR004014 -
Lan1g1238 937 PRINTS P-type cation-transporting ATPase superfamily signature 166 180 - -
Lan1g1238 937 PRINTS P-type cation-transporting ATPase superfamily signature 316 330 - -
Lan1g1238 937 PRINTS P-type cation-transporting ATPase superfamily signature 470 481 - -
Lan1g1238 937 PRINTS P-type cation-transporting ATPase superfamily signature 492 502 - -
Lan1g1238 937 PRINTS P-type cation-transporting ATPase superfamily signature 575 594 - -
Lan1g1238 937 PRINTS P-type cation-transporting ATPase superfamily signature 598 610 - -
Lan1g1238 937 SUPERFAMILY HAD-like 312 622 IPR036412 -
Lan1g1238 937 SUPERFAMILY Calcium ATPase, transduction domain A 119 216 IPR008250 -
Lan1g1238 937 Gene3D - 81 800 - -
Lan1g1238 937 Gene3D - 328 475 IPR023299 GO:0000166
Lan1g1238 937 CDD P-type_ATPase_H 21 826 IPR006534 GO:0008553|GO:0016021|GO:0120029
Lan1g1238 937 Gene3D - 313 612 IPR023214 -
Lan1g1238 937 SFLD p-type atpase 298 626 IPR044492 -
Lan1g1238 937 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 21 791 IPR006534 GO:0008553|GO:0016021|GO:0120029
Lan1g1238 937 SFLD C1.7: P-type atpase like 298 626 - -
Lan1g1238 937 PRINTS H+-transporting ATPase (proton pump) signature 432 450 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan1g1238 937 PRINTS H+-transporting ATPase (proton pump) signature 547 563 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan1g1238 937 PRINTS H+-transporting ATPase (proton pump) signature 575 591 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan1g1238 937 PRINTS H+-transporting ATPase (proton pump) signature 606 631 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan1g1238 937 PRINTS H+-transporting ATPase (proton pump) signature 745 766 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan1g1238 937 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 550 664 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan1g1238 937 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 88 335 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan1g1238 937 ProSitePatterns E1-E2 ATPases phosphorylation site. 318 324 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1238 Lan-Chr1 22228423 22232859 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1238 4 937 Primary Pumps ATPases AT4G30190 82.353 0.0 1580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1238 K01535 - gmx:100816905 1659.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1031 12 16980966 16987763 Lan1g1238 1 22228423 22232859 LSH
Lan1g1238 1 22228423 22232859 Lan1g0379 1 2975649 2984068 LSH