Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1235 ATGGCTTCGTTCCCTCTTCATCAATTCCAACCATCTTTTCTCGGTGTTGCACTTAATTTTTATAAATGTGGTAAGTTAAGTATGGAGGAAAAAAGAGAACTTGTATATGAAATATCTAAATCTCATGGTGCATCCGAGATGCTCCAGTCGTGGAGCCGTCAAGAGATTTTACAAATCTTGTGTGCAGAGATGGGAAAAGAAAGGAAGTATACTGGGTTGACAAAGTTGAAAATTATAGAACATCTTCTAAATATTGTTTCTGAAAAGAAATCAGAGGGCCTTGTAATTACAACAGACTCGGAACGACATTCTTCTCCTGCAAGTGGTCAGAAATCTGCAAAACGGCAGAGAAAAATTGAGAATCCATCTCGATTACATGTGCCTGCAAACAATGTTTCAGTCAGTAATGTCGGCAATTTGGGTAGTGCCACATACTGCAAAAACTCAGCTTGCAAAGCTACGTTAAATCAAGCAGATGCATTTTGCAAAAGATGTTCATGCTGCATTTGCCATCAATATGATGACAACAAAGACCCTAGCCTATGGTTAATATGTAGCTCTGAGTATCGGTTTCCCAGTGTTTCTTGTGGCCTGTCATGTCACCTTGAGTGTGCTTTAAAACATGATGGTTCTGGGATTGGCAAAACTGGCGAACGTCCCAAGCTTGATGGAAGCTTCTACTGCGTTTCTTGTGGGAAAGTAAATGATTTACTCAGATGCTGGAGAAAACAACTGATGGCAGCTAAAGATACCAGACGTGTGGACATACTCTGTTACCGCGTCTCCTTAAGCCAAAGACTTTTACAAGGGACTGAAATTTATCAAGAACTTCACGAAATTGTTGATGAAGCCGTGAAGAAACTTGAACCTGAAGTGGGCCCGTTGACTGGCTCACTGGTGAAGATTGGTAGGGGGATTGTGAACAGGCTCTCAGTAGGACCAGAGGTTCAGAAACTCTGTGGTTTGGCTGTGGAATCACTTTCTAAAAGGATCTCACCTTCACCACCTACTCAAGGTGCTAACTTGCTTGCTCCAAATATGGTGAGGTTTGAAAAAGTCACTGCGACGTCCCTCACTGTTATTTTGGGTTCTGAAGACCCTTCTGTAGAATGTATTTCTGGTTACACCTTGTGGCATCGCAAAGTTGATGATGTGAACTATCCAGCGGAGCCGACTTGCACTTTTCTTCTACCAAATAGAACCTTTTGTATAAGGGGCTTAACTCCAGCTACAGAATACATTTTCAAAGTTGCATCCAATAATTCTAGGGAACTGGGGAAGTGTGAAATTCATATTTCAACAGAGCATGGTGAGGATGAAGTCCCTAATTGCTCAGCACCAGAAAGAAGTCAGAGCCCAGCAACCAATTGTAGCAGCCTTTCGAATCCGTCATCAGTGGAAGATGAAACTAATATCAGTAATCCATATAGTGATCAGACCGATAATCAAGCAGGCCATTATCATACTTATCACAAGGACTTCAACCAGCTTGCTTCTGGAAATTTATCTAATGCTGCTATTAACTGTTCCAATATAGGTGCAGTAGGACTTCCTGCTGACGCAGATTCTTTGTCAGACAGACAGCATGCTGCGGGAACAGCTGGTTCCGTACCTGCTTCTGATGTACTAAAGCTTGAAAACAAACACTTACCGGAGGAGCAAGTCACCAAGGACACGAGCACTGATGATGGATTGAATTCCCCAGTTCAAACTGGTAGGGAATGTGAGCCATTAGTAGTTACCTCGGAAGGAGGCTTCCCTAATACTCCATGCAAGTTGGAAATACTTAAAGATTGGCCAGGAAGAAATGGTAGATCTAAATCCAGTGGCAAAGATAAACAAAATGAATCTGGGAAAAAGGAGGGGCCTCAAGATGGAAGCACATCCAAGAAGAGAAGCGGGGAAAGACAACATGATGGGTGTGCTGATCGTGATTTTGAGTATTGTGTGAAGGTGATTAGATATTTAGAGTGTGAAGGACATATAGAAAAGAACTTCAGACAGAAGTTTCTTACTTGGTACAGCTTAAGGGCAACCCCTCAAGAAGTAAGGATTGTGAAAATATATATTGATACATTTCTTGAAGATCCAGCATCTCTGGCAGAGCAGCTTGTGGACACCTTTTCAGAATGTATATCAAGCAAGAGAACGTCAACGGTGCCAGCGGGGTTGTGCATGAAGCTTTGGCATTGA 2193 0.4227 MASFPLHQFQPSFLGVALNFYKCGKLSMEEKRELVYEISKSHGASEMLQSWSRQEILQILCAEMGKERKYTGLTKLKIIEHLLNIVSEKKSEGLVITTDSERHSSPASGQKSAKRQRKIENPSRLHVPANNVSVSNVGNLGSATYCKNSACKATLNQADAFCKRCSCCICHQYDDNKDPSLWLICSSEYRFPSVSCGLSCHLECALKHDGSGIGKTGERPKLDGSFYCVSCGKVNDLLRCWRKQLMAAKDTRRVDILCYRVSLSQRLLQGTEIYQELHEIVDEAVKKLEPEVGPLTGSLVKIGRGIVNRLSVGPEVQKLCGLAVESLSKRISPSPPTQGANLLAPNMVRFEKVTATSLTVILGSEDPSVECISGYTLWHRKVDDVNYPAEPTCTFLLPNRTFCIRGLTPATEYIFKVASNNSRELGKCEIHISTEHGEDEVPNCSAPERSQSPATNCSSLSNPSSVEDETNISNPYSDQTDNQAGHYHTYHKDFNQLASGNLSNAAINCSNIGAVGLPADADSLSDRQHAAGTAGSVPASDVLKLENKHLPEEQVTKDTSTDDGLNSPVQTGRECEPLVVTSEGGFPNTPCKLEILKDWPGRNGRSKSSGKDKQNESGKKEGPQDGSTSKKRSGERQHDGCADRDFEYCVKVIRYLECEGHIEKNFRQKFLTWYSLRATPQEVRIVKIYIDTFLEDPASLAEQLVDTFSECISSKRTSTVPAGLCMKLWH* 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1235 730 MobiDBLite consensus disorder prediction 594 639 - -
Lan1g1235 730 Pfam PHD - plant homeodomain finger protein 146 265 IPR032881 -
Lan1g1235 730 MobiDBLite consensus disorder prediction 436 485 - -
Lan1g1235 730 MobiDBLite consensus disorder prediction 551 574 - -
Lan1g1235 730 CDD PHD_VIN3_plant 166 231 - -
Lan1g1235 730 ProSiteProfiles Fibronectin type-III domain profile. 344 439 IPR003961 GO:0005515
Lan1g1235 730 MobiDBLite consensus disorder prediction 97 122 - -
Lan1g1235 730 MobiDBLite consensus disorder prediction 445 484 - -
Lan1g1235 730 Gene3D Immunoglobulins 341 440 IPR013783 -
Lan1g1235 730 MobiDBLite consensus disorder prediction 598 639 - -
Lan1g1235 730 PANTHER VIN3-LIKE PROTEIN 2-RELATED 16 730 IPR044514 GO:0010048|GO:0040029
Lan1g1235 730 MobiDBLite consensus disorder prediction 98 112 - -
Lan1g1235 730 PANTHER VIN3-LIKE PROTEIN 2-RELATED 16 730 - -
Lan1g1235 730 SUPERFAMILY Fibronectin type III 344 426 IPR036116 GO:0005515
Lan1g1235 730 CDD FN3 344 427 IPR003961 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1235 Lan-Chr1 22177007 22181712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1235 12 471 PHD Gene Family AT4G30200 53.479 6.71e-152 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1235 - - gmx:100794721 1169.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1035 12 17016797 17021212 Lan1g1235 1 22177007 22181712 LSH
Lan1g1235 1 22177007 22181712 Lan1g0372 1 2896250 2907952 LSH