Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1234 ATGGACTCATCAACCTCTTCTTCACCCCACAACACCAACACCAACTTCAATAACAATAACAATAACTCCCTCGCTTTTTCCCTCTCTAACCACTTTCCTAACCCTTCCTCTTCACAACACTCTTCCCATAACCTCTCCCTCTTCCACTCCTTCTCTTATCCAACACCCACACCATCTCTTTACCTCACAGGGAGCAATAACGTGGAAGCACCGCCAGAGGCAACTAACCTCTCTATATTCAGCGGTGGAACAAAGTTCGAGGATTTCTTAGGTTGTTCCACCACAACAGCAGCAACAGGTGCACCCTTACAACTTCACCAGTTCTCTACCGAAACCGACATATACGGTTCGGAACTGAAGACAACCTTAGCTGCTTGTTACCCTCGCGGCTTCGGTGCCGAACCAACCACCGAGCCTCAGAAACCATCTCCCAAGAAAACTTCTGACACCTTTGGCCAACGCACCTCCATATACCGTGGCGTCACCCGACATAGATGGACGGGTAGATATGAAGCTCATCTTTGGGACAATAGCTGCAGAAGGGAAGGACAAAGCAGAAAAGGAAGACAAGTCTATTTAGGTGGTTACGATAAGGAAGAGAAAGCAGCAAGAGCTTATGATCTTGCAGCTCTCAAGTACTGGGGTCCAACAATAACTACAAACTTCCCTATCTCTAACTATGAGAAGGAACTAGAGGACATGAAGAACATGACCAGACAAGAGTTTGTTGCTTCTCTAAGAAGGAAGAGCAGTGGTTTCTCTAGAGGGGCCTCTATATACAGAGGAGTGACAAGGCACCATCAGCATGGTCGATGGCAGGCAAGAATTGGCAGAGTTGCCGGAAACAAAGACCTTTACCTTGGCACTTTCAGTACTCAAGAAGAAGCTGCAGAGGCCTATGACATTGCAGCAATCAAATTCAGAGGACTAAATGCAGTGACCAACTTTGACATGAGTCGCTATGATGTAAAGAACATTGCAAATAGTACCCTTCCTATTGGTGGTTTATCAAGCAAGAACAAAAACTCAACAGATTCTGTATCTGATCAAAGCAAAAGCCATTCAGATGAGAAAGATCCATCTAATTCAGCTTCATCAGTGTCCTTTGCATCACACCAGCAACAACCACCTTCAAACTCCACTCTCAGCTTTGCCATTCCCATCAAACAAGACCCTTCAGATTATTGGTCCATCCTAGGCTACCATAATAGTAACACTACTAGTGTTACTACTACACCAACTTCTTTTCAATCTTCCACCAATAGCACACCATTCCTCATGGACTTCTCTGCTCCCCCTTCAAGTGATAATAATACTAACAATGCTGCATTTTTGAATAATGGAAGCATCTTTGTTCATCCACAAAGTGGTGATTGTTCTAATAATTCAAGTTCAATCCCATTGGCCACACCCATCTTTTCTTTAAATAGTAATAGTGGTTATGTGAATTCTTCTGGTGGTTATGGAAACTGGATTGGACCAACCCTGCACACATTTCAAACCCATGATAAACCAAGTCTCTTTCAAACCCCAATATTTGGCATGGAATGA 1551 0.4391 MDSSTSSSPHNTNTNFNNNNNNSLAFSLSNHFPNPSSSQHSSHNLSLFHSFSYPTPTPSLYLTGSNNVEAPPEATNLSIFSGGTKFEDFLGCSTTTAATGAPLQLHQFSTETDIYGSELKTTLAACYPRGFGAEPTTEPQKPSPKKTSDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTITTNFPISNYEKELEDMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKNIANSTLPIGGLSSKNKNSTDSVSDQSKSHSDEKDPSNSASSVSFASHQQQPPSNSTLSFAIPIKQDPSDYWSILGYHNSNTTSVTTTPTSFQSSTNSTPFLMDFSAPPSSDNNTNNAAFLNNGSIFVHPQSGDCSNNSSSIPLATPIFSLNSNSGYVNSSGGYGNWIGPTLHTFQTHDKPSLFQTPIFGME* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1234 516 MobiDBLite consensus disorder prediction 332 384 - -
Lan1g1234 516 CDD AP2 156 225 IPR001471 GO:0003700|GO:0006355
Lan1g1234 516 ProSiteProfiles AP2/ERF domain profile. 259 317 IPR001471 GO:0003700|GO:0006355
Lan1g1234 516 MobiDBLite consensus disorder prediction 1 20 - -
Lan1g1234 516 MobiDBLite consensus disorder prediction 332 349 - -
Lan1g1234 516 Gene3D AP2/ERF domain 259 319 IPR036955 GO:0003700|GO:0006355
Lan1g1234 516 Gene3D AP2/ERF domain 157 225 IPR036955 GO:0003700|GO:0006355
Lan1g1234 516 SUPERFAMILY DNA-binding domain 258 319 IPR016177 GO:0003677
Lan1g1234 516 PRINTS Ethylene responsive element binding protein signature 158 169 IPR001471 GO:0003700|GO:0006355
Lan1g1234 516 PRINTS Ethylene responsive element binding protein signature 299 319 IPR001471 GO:0003700|GO:0006355
Lan1g1234 516 ProSiteProfiles AP2/ERF domain profile. 157 223 IPR001471 GO:0003700|GO:0006355
Lan1g1234 516 Pfam AP2 domain 157 215 IPR001471 GO:0003700|GO:0006355
Lan1g1234 516 Pfam AP2 domain 259 309 IPR001471 GO:0003700|GO:0006355
Lan1g1234 516 MobiDBLite consensus disorder prediction 360 384 - -
Lan1g1234 516 MobiDBLite consensus disorder prediction 130 151 - -
Lan1g1234 516 CDD AP2 258 319 IPR001471 GO:0003700|GO:0006355
Lan1g1234 516 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 27 432 - -
Lan1g1234 516 SUPERFAMILY DNA-binding domain 156 225 IPR016177 GO:0003677
Lan1g1234 516 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 27 432 - -
Lan1g1234 516 SMART rav1_2 157 229 IPR001471 GO:0003700|GO:0006355
Lan1g1234 516 SMART rav1_2 259 323 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1234 Lan-Chr1 22165993 22170014 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1234 113 516 AP2-EREBP Transcription Factor Family AT5G57390 55.765 2.04e-142 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lan1g1234 AP2 3.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1234 K09285 - gmx:100797828 697.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1234 1 22165993 22170014 Lan1g0371 1 2888499 2892340 LSH