Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1224 ATGGATACTGATGATGAGTGCTCAATTGTTCTCGAGCTGTCTAAAAATGATCATTTCTTTGATAAAAAGAAGAAATTACTACAAAGTAAGGGTTTTAGTCCCAAGGAACAGATATATCTCAGGAGCTCCATAAAGCCTGGTTGGATGAGTGCTACTGTAAAGGTGTTACTTCAGATTGCACGAATCATACAGTTAAACGAGCTGGAACTTTATTTTGCTGAAGATGGTGCATGCACATCAGAGGAGTTTTACAGCCCTAGAAATGAGTTGGAGGCTCTAAATTCAATTGTTGTGCTGACTGACACATCACTTTCTAGTTGTACCCATCTCCATACAAATATCCTGAAAGAGTTACGGAAAATAGTTATTGATTTAATTTCTGATTTTGGGGTCAAGAACAGTGTGAAGGGAGTAGTTGAAAGAGATTACACATGTGACCAAGTAGAACGTCTGGTAGAATGGGGTGAAAGCAATGGTGTAAGGACACAGTTAAAGATATCTTATATTGAAGGAGCAGGCCGGGGTGCGATAGCAAGGAAAGATCTAAAATTTGGAGACGTTGCTTTAGAAATTCCACTGTCAATTATAATTTCCGAGGAACTTGTGTATGAAACTGATATGCATCATGTCTTAAAAGAGGTTGATGGCATATCATCTGAGACAATATTGCTGTTATGGAGTATGAAAGAGAAGTACAACTGTGATTCAAAATTCAAATTTTACTTTGATTCACTGCCAGAAAAATTTAATACAGGATTGAGTTTTGGCATCGAAGCAATCATGATGTTAGATGGAACTTTGCTGCTGGAAGAGATAATGCAAGCGAGAGAGCACCTGCGTGCTCAATATGATGAGTTGTTCCCCGCTCTATGTGATGCTTTTCCTGATATATTTCCACTAGAGCTGTACACATGGGAGAAATTTTTATGGGCTTGTGAACTTTGGTACTCTAATAGCATGAAGATAATGTATTCTGATGGAAAGCTGAGAACATGCTTGATCCCTATTGCTGGTTTTCTTAATCATTCACTGTGCCCACATATTACGCACTACGGCAAAGTAAGTGCGAAGATGAATTCATTGAAATTTTGTCTATCAAGGCCATGCAGATCTGGAGAAGAATGTTGCTTAAGCTACGGGAACTTCTCCAGCTCTCATCTAATTACCTTTTATGGTTTCTTACCACAAGGAGACAACCCCTATGATGTCATTCCATTAGACATGGATGGTTCTGATAATGATTCTATTGAGGATAAATCCAAGTCCAACTGGACGACTCACATGGTGCGTGATACTTACCTCTCCAACAATCACAGCATATTTCATTATGGCCTTCCCTCTCCACTATTGGACCACCTTCGGAGATCTCGAAGTCCTCTGCAGCAAACTAAGACTTTCTTGCAAGGAAACTTGGAAAATGAGCTGGAAGTTCTTGAAGATCTCAAATATATCTTTGATGATATGATCGACAATATGGGCGAAATGGATTCTGTTGACAGAGAAAACTGGAGCTGGGATGAAAAATTGGCAATGGATTTTAAAATGCAACAAATTCGAATCGCCTCTTCTGTTTCAACTTCGTGTCAAAATGGTCTCAACATAGTGAAGAATGAACTCCACAAGTGCATGGCTGAGGACATCCAAGGCTAA 1650 0.3927 MDTDDECSIVLELSKNDHFFDKKKKLLQSKGFSPKEQIYLRSSIKPGWMSATVKVLLQIARIIQLNELELYFAEDGACTSEEFYSPRNELEALNSIVVLTDTSLSSCTHLHTNILKELRKIVIDLISDFGVKNSVKGVVERDYTCDQVERLVEWGESNGVRTQLKISYIEGAGRGAIARKDLKFGDVALEIPLSIIISEELVYETDMHHVLKEVDGISSETILLLWSMKEKYNCDSKFKFYFDSLPEKFNTGLSFGIEAIMMLDGTLLLEEIMQAREHLRAQYDELFPALCDAFPDIFPLELYTWEKFLWACELWYSNSMKIMYSDGKLRTCLIPIAGFLNHSLCPHITHYGKVSAKMNSLKFCLSRPCRSGEECCLSYGNFSSSHLITFYGFLPQGDNPYDVIPLDMDGSDNDSIEDKSKSNWTTHMVRDTYLSNNHSIFHYGLPSPLLDHLRRSRSPLQQTKTFLQGNLENELEVLEDLKYIFDDMIDNMGEMDSVDRENWSWDEKLAMDFKMQQIRIASSVSTSCQNGLNIVKNELHKCMAEDIQG* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1224 549 Pfam Rubisco LSMT substrate-binding 15 106 IPR015353 -
Lan1g1224 549 CDD SET_LSMT 164 394 - -
Lan1g1224 549 Pfam SET domain 173 380 IPR001214 GO:0005515
Lan1g1224 549 ProSiteProfiles SET domain profile. 162 380 IPR001214 GO:0005515
Lan1g1224 549 PANTHER BNAA07G01600D PROTEIN 3 545 - -
Lan1g1224 549 Gene3D - 2 121 IPR036464 -
Lan1g1224 549 SUPERFAMILY SET domain 146 401 IPR046341 -
Lan1g1224 549 Gene3D set domain protein methyltransferase, domain 1 144 394 - -
Lan1g1224 549 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 3 545 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lan1g1224 SET 3.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1224 K19199 - gmx:100778605 911.753