Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1218 ATGGAACATTCACATGATAATCACGACGAGTTGATTTTCCGTTCCAAACTCCCCAACATCTACATCCCAATTCACCTACCACTACACACTTACTGCTTCGAAAACCTCTCTCAATTCAAAGACAACCCATGCATTATCAACAGCAACACCGGTGAGATATTCACTTATTCCGACGTAGAACTCACCGCCCGGAAAGTCGCCGCCGGTTTCAACAACCTTGGTATCAAACAAGGCGATGTTATACTCCTCCTTCTCCAGAATTGCCCACAATTCGTATTTTCATTCCTTGGAGCCTCCTACCTTGGTGCCATCATCACCACCGCCAACCCCTTTTATACATCGGCGGAGGTGGAAAAACAAGCGGCGGCGTCAAACACGAAGATCATCATAACACAATCCTCCTACGTTGAAAAAGTTAAAGATTTCGCGAGAGACTACAACATCAAAGTGGTGTGTATTGACGCGATACCGGAGGGTGAATACTTGCATTTCTCGGAGCTAACCTCCTCCGATGAGGATGATATCCCCGCAGTGAAAATCTCCCCGGACGACGTCGTTGCTTTGCCTTATTCCTCCGGCACGACGGGGCTTCCAAAAGGGGTGATGCTAACACACAAAGGGTTAGTTACAAGCGTAGCGCAACAAGTTGATGGAGAAAACCCTAATATTTATTTTCATAGCAACGACGTGATCCTTTGCGTTTTGCCACTTTTCCACATTTATTCACTTAACTCAGTTTTGCTATGTGGTCTTCGAGTTGGGGCTGCAATTTTGATAATGCAAAAGTTCGAGATCATAACGTTGTTGGAGTTGGTTGAGAAACATAAAGTGACTATTGCACCGTTTGTGCCACCCATCGTTTTGGCAATTGCAAAGAGTGATGATTTGGAACGATACGACTTGTCGTCGATAAGAATGATAATGTCAGGTGCCGCACCCATGGGAAAGGAACTTGAGGAAGCTGTTAGGGCCAAGCTTCCCAACGGCACACTTGGACAAGGTTACGGAATGACAGAAGCGGGACCAGTGCTATCAATGTGTTTAGCGTTTGCAAAGGATCCATTTGTGGTCAAATCTGGTGCGTGCGGGACCGTAGTAAGAAATGCAGAGATGAAGATTATTGACCCTGAAACTGGCACCTCCCTTTCTAGGAATCAAGCTGGTGAAATTTGCATTAGAGGGAACCAGATTATGAAAGGTTACCTAAAGGACCCAGAAGCCACAGAAAGAACTATAGACAAAGGAAGATGGTTGCACACAGGTGATATCGGTTATATTGATGATAATGATGAAGTTTTCATTGTTGATCGATTAAAAGAACTAATCAAATATAAAGGATTTCAAGTTGCACCTGCTGAGCTCGAAGCCATGTTAATTGCTCACCCAAACATTGTTGATGCTGCTGTTGTATCCATGAGAGATGAGGCTGCAGGAGAGGTTCCAGTTGCATATGTTGTAAGATCAATCGGTTCTAAGATTTCAGAGGATGAAATCAAGAAATATATTTCAAAGCAGGTTGTGTTTTATAAAAGAATCAATAGGGTTTTCTTTGTGGACTCAATTCCAAAGGCACCCTCTGGCAAGATTTTGAGGAAAGAACTTAGGGCAAGGCTTGCAGAAGGTCTTGTTTAG 1632 0.4387 MEHSHDNHDELIFRSKLPNIYIPIHLPLHTYCFENLSQFKDNPCIINSNTGEIFTYSDVELTARKVAAGFNNLGIKQGDVILLLLQNCPQFVFSFLGASYLGAIITTANPFYTSAEVEKQAAASNTKIIITQSSYVEKVKDFARDYNIKVVCIDAIPEGEYLHFSELTSSDEDDIPAVKISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNIYFHSNDVILCVLPLFHIYSLNSVLLCGLRVGAAILIMQKFEIITLLELVEKHKVTIAPFVPPIVLAIAKSDDLERYDLSSIRMIMSGAAPMGKELEEAVRAKLPNGTLGQGYGMTEAGPVLSMCLAFAKDPFVVKSGACGTVVRNAEMKIIDPETGTSLSRNQAGEICIRGNQIMKGYLKDPEATERTIDKGRWLHTGDIGYIDDNDEVFIVDRLKELIKYKGFQVAPAELEAMLIAHPNIVDAAVVSMRDEAAGEVPVAYVVRSIGSKISEDEIKKYISKQVVFYKRINRVFFVDSIPKAPSGKILRKELRARLAEGLV* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1218 543 ProSitePatterns Putative AMP-binding domain signature. 188 199 IPR020845 -
Lan1g1218 543 CDD 4CL 22 534 - -
Lan1g1218 543 Pfam AMP-binding enzyme 34 444 IPR000873 -
Lan1g1218 543 SUPERFAMILY Acetyl-CoA synthetase-like 11 540 - -
Lan1g1218 543 Gene3D - 3 438 IPR042099 -
Lan1g1218 543 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 539 - -
Lan1g1218 543 Pfam AMP-binding enzyme C-terminal domain 453 528 IPR025110 -
Lan1g1218 543 Gene3D - 439 541 IPR045851 -
Lan1g1218 543 PANTHER 4-COUMARATE--COA LIGASE 2-LIKE 7 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1218 Lan-Chr1 22059628 22064633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1218 2 506 Monolignol Biosynthesis Gene Families AT1G51680 69.591 0.0 725
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1218 K01904 - gmx:100779668 891.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1218 1 22059628 22064633 Lan1g0362 1 2764790 2774437 LSH