Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1217 ATGAATTTTCATCATCCTAATACTTCTCTTCACCTATGTCAACCTGATGAGAATAATCCACTCAATCTTGATCTTCTACTTGACCCTTCTTCATATTCACCTCCTATTAGTTTAATGGAACCTAGGATATTCTCATGCAACTATTGCCAGAGAAAGTTTTATAGTTCACAAGCTTTGGGAGGACATCAAAATGCTCACAAGCTGGAAAGGACTCTGGCCAAGAAGAGTAGGGAGCTGAGTTCAGCCATGCAAGCTTATGTAGGAGAAGGACAAGAACAAAGACCAAATTTCATTGCTAATTCACACCAAAATCATCATCTTGGTCGTGCTCTTGGGGTCATGGAAAATCAGCGACAAGGTACGAGAAGAGAGTTTAGCTACGGTTTCAAAGAAGGGGTGCCATCTTGGTCCCGTGGATATAATAACGAAAATAATGTTAAAGAAGATGTTAGCCAACTTGACTTGTCCTTAAGGCTTTGA 480 0.4021 MNFHHPNTSLHLCQPDENNPLNLDLLLDPSSYSPPISLMEPRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSRELSSAMQAYVGEGQEQRPNFIANSHQNHHLGRALGVMENQRQGTRREFSYGFKEGVPSWSRGYNNENNVKEDVSQLDLSLRL* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1217 159 Coils Coil 65 85 - -
Lan1g1217 159 Gene3D Classic Zinc Finger 37 97 - -
Lan1g1217 159 SUPERFAMILY beta-beta-alpha zinc fingers 41 71 IPR036236 -
Lan1g1217 159 PANTHER ZINC FINGER PROTEIN JAGGED 19 159 IPR045320 GO:0003700
Lan1g1217 159 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Lan1g1217 159 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Lan1g1217 159 PANTHER ZINC FINGER PROTEIN 2 19 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1217 Lan-Chr1 22056136 22057135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1217 4 79 C2H2 Transcription Factor Family AT5G57520 67.059 2.40e-27 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan1g1217 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1217 - - gmx:100778014 186.422
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1049 12 17117855 17119640 Lan1g1217 1 22056136 22057135 LSH
Lan1g1217 1 22056136 22057135 Lan1g0360 1 2732222 2733304 LSH