Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1184 ATGCAGCAAGGTGATCAAACATTTATTAGCTTGAGGCCTGGCGGTGGTCGTGGCGGCGGCGGCGGTAACAGATTCGTTGCTCCTCGATTCGATTCCTCCTCCTCTTCTGCTGCTTCAATCCCTGTTTTCGGTTCCTTTTCTTCTGATCCATCTCCACATGGCGCTGCTCCTTCTTCATTCTCTATTCAGTCAGGAGATTCACGGTTTGAGGGTCGTGAGCGTGTGCGATATACCAAAGAACAGCTTTCAAAGCTTCGAGGGGTTGTTGAGATCCCCGATGATATTTTAAAGATCAAACAAGATATTGCAGCTGAACTTTTTGGTGAAGATCAAAGTTGGGGCCGCCCAGAAAACAATCCTCCAAATCAATCACAAAATCGATATACTGAGACAGATAACCGTGACTGGCGTGGCCGTTCTGGGCAGCTTCCTGCTAATGCAGACGAGAGGTCTTGGGGTAATCTCAAGGAGAATAGAGACTTTGGCAATAATAATTGGAAAGACCAACTGAATTCTCAGTTTGGAAGGGCACAAATCTCTTCTAACCAAGGGGGAGGACCTACTCCTACTCTAGTCAAGGCTGAGGTGCCCTGGTCAGCTAGAAAGGCAACTCTCTCTGACAAGGGTCGTGTCTTGAAGACTGTTAAAGGAATACTAAATAAGTTAACTCCTGAGAAATTTGATCTCCTGAAGGGTCAGTTGATCGATTCTGGCATTACATCAGCCGACATATTGAAGGGAGTCATTTCTCTTATTTTTGATAAGGCAGTGCTAGAGCCAACATTTTGCCCCATGTATTCTCTGTTGTGTTCTGATCTTAATGAGAAGCTGCCTCCATTCCCATCTGATGAACCTGGTGGGAAAGAAATCACTTTTAAGAGAGTGCTCTTGAATATCTGTCAGGAGGCCTTTGAAGGTGCAGATAAACTGAGAGAAGAACTGAGGCAGATGACTGCCCCCGAGCAAGAGATGGAGCGTCGAGACAAGGAAAAGCTTCTCAAGATTCGTACCCTTGGAAACATCCGTTTAATTGGTGAGCTGTTGAAGCAAAAAATGGTTCCTGAAAGGATTGTCCATCACATTGTTCAGGAGCTTTTAGGACCTGCTGACAGCAAGGTTTGCCCTGCTGAGGAAAATGTTGAAGCTATATGTCAGTTTTTCAACACCATTGGTAAGCAGCTCGATGAAAGTCCAAAATCACGGCGTATAAATGATATGTACTTCAGTGGGTTGAAAGAATTGAGCACAAATCCCCAACTTGCACCACGGCTGAGGTTCATGGTTCGTGATGTTATAGACTTGCGTGCTAGTAACTGGATTCCAAGACGTGAAGAGGTGAAAGCCAAAACCATCACTGAAATTCATTCAGAGGCAGAGAAAAATCTTGGATTGCGTCCAGGTGCCACTGCAAGTATGAGAAATATCCGTGCACCTTCCAGTGCTCAAGGAAGTACCAACCCTGGCGGCTTCCCCATTGCTCGCCCTGGTACAGGGGGTTTGATGCCTGGGATGCCAGGGATTTCAGGGAGGGGGATTCCTGGACTTGATAATGACAACTGGGAGAAGCCTAGGTCTAGATCAATAACAAGAGGAGACATTTCTGGCACACAAACTGCTGGACGCGGCCAGTCTCCTTTCCTTTCCAAGTCATCAACAACTGTGAACTCCAAGTTTCTACCCCAAGGCAGTGGTCTTGTTAGTGGGAGAAATAGTGCCTTAGTGCATGGTGGAGGTGGAGCTCCTTCTGCCCGTCCATCAAACACTGGTGTAGCTACTGAGTCTGCACCTGAAATCTCTCCGCCCGTCAAACCTGTTGCTGCCGTGTCCGCTGTGGTGTCACAGGCTCCTGCTGCCAAATTTAATACTGATGTTCTTCGCCGGAAAACTGTATCTCTTCTGGAAGAATATTTCAGTGTTCGACTTTTGGATGAGGCATTACAGTGTGTGGAGGAACTAAAATCTCCAGCTTACTATCCCGAGCTTGTGAAGGAAGCCATTTCCCTTGCACTAGATAAAAGTCCGCCTCACATTGAACCTGTGGCCAGTCTTGTTGAGTATCTGTTTATTAAGAAGATTCTTTCAGCAAGAGACATAGGGACTGGTTGCTTGTTGTTTGGTTCTATGATGGATGATATTGGCATAGATTTACCTAAGGCACCAAATAATTTTGGTGAGATAATAGGTAAACTAATTCTAGCCGGGGGTTTGAATTTTAAGGTGGTAAAAGAGATCCTTGAGAAGGTGGAGGATGACCGATTCCAGAAAGCGATATTTGATGCCGCAGTTCAGGTAATTAGCACTGCATCTGGGAAAGCCGTGTTGGATTCACAAGCATCTGATATTGAAGCTTGCCGGAGTGTGTTCAACTGA 2370 0.4603 MQQGDQTFISLRPGGGRGGGGGNRFVAPRFDSSSSSAASIPVFGSFSSDPSPHGAAPSSFSIQSGDSRFEGRERVRYTKEQLSKLRGVVEIPDDILKIKQDIAAELFGEDQSWGRPENNPPNQSQNRYTETDNRDWRGRSGQLPANADERSWGNLKENRDFGNNNWKDQLNSQFGRAQISSNQGGGPTPTLVKAEVPWSARKATLSDKGRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKGVISLIFDKAVLEPTFCPMYSLLCSDLNEKLPPFPSDEPGGKEITFKRVLLNICQEAFEGADKLREELRQMTAPEQEMERRDKEKLLKIRTLGNIRLIGELLKQKMVPERIVHHIVQELLGPADSKVCPAEENVEAICQFFNTIGKQLDESPKSRRINDMYFSGLKELSTNPQLAPRLRFMVRDVIDLRASNWIPRREEVKAKTITEIHSEAEKNLGLRPGATASMRNIRAPSSAQGSTNPGGFPIARPGTGGLMPGMPGISGRGIPGLDNDNWEKPRSRSITRGDISGTQTAGRGQSPFLSKSSTTVNSKFLPQGSGLVSGRNSALVHGGGGAPSARPSNTGVATESAPEISPPVKPVAAVSAVVSQAPAAKFNTDVLRRKTVSLLEEYFSVRLLDEALQCVEELKSPAYYPELVKEAISLALDKSPPHIEPVASLVEYLFIKKILSARDIGTGCLLFGSMMDDIGIDLPKAPNNFGEIIGKLILAGGLNFKVVKEILEKVEDDRFQKAIFDAAVQVISTASGKAVLDSQASDIEACRSVFN* 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1184 789 MobiDBLite consensus disorder prediction 477 598 - -
Lan1g1184 789 MobiDBLite consensus disorder prediction 28 66 - -
Lan1g1184 789 PANTHER MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 3 788 - -
Lan1g1184 789 SUPERFAMILY ARM repeat 206 440 IPR016024 -
Lan1g1184 789 SMART if4_15 212 438 IPR003890 GO:0003723|GO:0005515
Lan1g1184 789 Gene3D - 618 784 - -
Lan1g1184 789 MobiDBLite consensus disorder prediction 115 129 - -
Lan1g1184 789 MobiDBLite consensus disorder prediction 1 68 - -
Lan1g1184 789 Pfam MA3 domain 625 736 IPR003891 -
Lan1g1184 789 MobiDBLite consensus disorder prediction 529 568 - -
Lan1g1184 789 Gene3D - 203 439 - -
Lan1g1184 789 ProSiteProfiles MI domain profile. 624 746 IPR003891 -
Lan1g1184 789 SMART ma3_7 625 737 IPR003891 -
Lan1g1184 789 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 3 788 IPR045208 GO:0003743
Lan1g1184 789 MobiDBLite consensus disorder prediction 109 167 - -
Lan1g1184 789 Pfam MIF4G domain 212 438 IPR003890 GO:0003723|GO:0005515
Lan1g1184 789 SUPERFAMILY ARM repeat 620 773 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1184 Lan-Chr1 21795432 21801230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1184 1 787 Eukaryotic Initiation Factors Gene Family AT5G57870 63.363 0.0 942
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1184 K03260 - gmx:100781275 1229.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1092 12 17438866 17444054 Lan1g1184 1 21795432 21801230 LSH
Lan1g1184 1 21795432 21801230 Lan1g0316 1 2299173 2315546 LSH