Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1169 ATGGCGGAGAATCAAAAGGGTAGTAGTGATTTCATGGATGAAGATGGTGGAGACCGTTTTCCAGTGGGTATGCGTGTTCTAGCTGTTGATGATGACCGAACTTGTCTCAAAGTGTTGGAGAATATGCTTCGTAGTTGCCAGTATCATGTTACTACAACTACGAATTCAATTAAGGCGCTAGAAATGTTGAGGATGAATAGAAATAAGTTTGATCTTGTTATCAGTGATGTAAAAATGCCAGACATGGATGGATTCAAGCTTCTTGAGCTTGTGGGACTGGAAATGGACCTACCTGTTATTATGTTGTCAGGACACAAAGATAAGGAGCTGGTGATGAAGGGTGTTATACATGGTGCATGTGACTATTTGCTGAAACCCGTCCGAATTGAAGAGCTGCAGAATATATGGCAACATGTAGTTCGGAAGAAGATTGATCGCAAGGATCACAATAAGACTTCTGCCAGTATAGAGGAGACTAGCAATATGGCTGGGGAAGGTAGTCATGGCATTGGATCAGAAAATAATTCTGACCAAATTATAAAGGTTGATAGAAAAAGGAAGGAACAAAGTGAGGAACGGGAAGAAGATGATGATGATGATAATAGAGCGGAAGATGAGGAGCCTTCAAGTCAGAAGAAGCCTCGTTTAGTTTGGGATGCGGAGTTGCATAGAAAATTTGTTGATGCCGTTAATCGACTGGGCCTTGATAATGCTGTTCCTAAGAAAATACTTGACTTGATGAATGTCGAAGGGCTTACAAGGGAGAATGTGGCAAGCCATCTGCAGAAATTCAGACTCGGTCTAAGAAAAGCAACTCAACAGGGTAACCAGGTTGCAACTGCATTTGGTGGTGTTAGTGATCCCTACCTGCAGATGGGTTCAGCAGATGGTTATCGAGATTTTTGCACTCCATATGGGTCAAGAAGAATCTCAAGCACCACACTACCATCATATGCATCTGGTGGAATTTATTGTGGGCTAAACTCCCCATCCGGTTCAACCATAGGAGGAATTGGTTCTTCCCTGGCCCAGTGGCGGCAAGCTCAGTCTCAAAACACGACCAACCCGATAAACTTGGTTCGAAACTACCAGCTCTCCATGTTTTCTGCAAATCAAAGCTCGAGTTTATTACCAGGCACTCCAACATCCGTTGACCTTAACCGGTTTCAGCAAAGCAACTGTACAACAGGTATTAGGCAGGTAAGTCCATTTGATAATTCAAATGGATTTACACTTCCCTCTGCCTTCCCAGATCATAAACCTGCTATTGGTAAAACAAATAACTCTCTATTTGGCCTCTCAAGTAATCATTTACTGTTTCAAGGAAATCTGGTGCCACCGACCCATAATTCAGGAGCATTTAGGAACCACTCTTCTCTTGGATCATCTCCTGTTAACACTGAAACATTTGACACTGGCATCTCTAGCTCCTCTAATGTGTCAGAGTATAATGAAAGGTGGCAAAGTACAGCTCAGTTGTCCAACTTTCCTTCCAATTCTTTACCCTTGAATGAGGCTTTCGATAGCAATCAACTGCCTCACAACAGCGTAAAGTTTTCCTCCTCCACTTCTCATATCGGGAATAGTCCAGCTGATTTTTCTTCCATAAGTGACAATGCTGTTCCTCTTGAAGATGCTTTAGGTGAGCTGAACTGCCAAGGTGGCCTACTTGGGAATATCATACAGCAGCAAAGATGGGAAGATCATAAGCAGGATTACAGTGAAAACATGAGTAATACCTTCAATTCTGAAAATTCACTCAGTTTTCCTAATGGACACAATAGTTACTTGGGGCACAGTTTAAACCAAAATAACACAGTTGATGCATCTTTGGTTGGCCAAATGAATGATGCAAGAATGAAGTTAAATGACGCATGCATTTTACAACAGATGACGTCCCAAGAAGGACTTGATCAGGGTAATTTTGCGTACTTGGATGATATAATTAGTGAAATGAACAAGCAGGAGCAAAACGGAACCCTGTTGGATCATGTATCTGAGTCGTTATGA 2010 0.4204 MAENQKGSSDFMDEDGGDRFPVGMRVLAVDDDRTCLKVLENMLRSCQYHVTTTTNSIKALEMLRMNRNKFDLVISDVKMPDMDGFKLLELVGLEMDLPVIMLSGHKDKELVMKGVIHGACDYLLKPVRIEELQNIWQHVVRKKIDRKDHNKTSASIEETSNMAGEGSHGIGSENNSDQIIKVDRKRKEQSEEREEDDDDDNRAEDEEPSSQKKPRLVWDAELHRKFVDAVNRLGLDNAVPKKILDLMNVEGLTRENVASHLQKFRLGLRKATQQGNQVATAFGGVSDPYLQMGSADGYRDFCTPYGSRRISSTTLPSYASGGIYCGLNSPSGSTIGGIGSSLAQWRQAQSQNTTNPINLVRNYQLSMFSANQSSSLLPGTPTSVDLNRFQQSNCTTGIRQVSPFDNSNGFTLPSAFPDHKPAIGKTNNSLFGLSSNHLLFQGNLVPPTHNSGAFRNHSSLGSSPVNTETFDTGISSSSNVSEYNERWQSTAQLSNFPSNSLPLNEAFDSNQLPHNSVKFSSSTSHIGNSPADFSSISDNAVPLEDALGELNCQGGLLGNIIQQQRWEDHKQDYSENMSNTFNSENSLSFPNGHNSYLGHSLNQNNTVDASLVGQMNDARMKLNDACILQQMTSQEGLDQGNFAYLDDIISEMNKQEQNGTLLDHVSESL* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1169 669 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 213 266 IPR006447 GO:0003677
Lan1g1169 669 PIRSF RR_ARR_type-B 1 667 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lan1g1169 669 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Lan1g1169 669 Gene3D - 209 271 - -
Lan1g1169 669 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 657 - -
Lan1g1169 669 SUPERFAMILY Homeodomain-like 211 270 IPR009057 -
Lan1g1169 669 Gene3D - 23 160 - -
Lan1g1169 669 SMART REC_2 24 136 IPR001789 GO:0000160
Lan1g1169 669 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 210 269 IPR017930 -
Lan1g1169 669 SUPERFAMILY CheY-like 23 148 IPR011006 -
Lan1g1169 669 Pfam Myb-like DNA-binding domain 217 263 IPR001005 -
Lan1g1169 669 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Lan1g1169 669 CDD REC_typeB_ARR-like 26 140 - -
Lan1g1169 669 MobiDBLite consensus disorder prediction 178 192 - -
Lan1g1169 669 MobiDBLite consensus disorder prediction 155 177 - -
Lan1g1169 669 MobiDBLite consensus disorder prediction 147 216 - -
Lan1g1169 669 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 657 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1169 Lan-Chr1 21686101 21689930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1169 18 514 Response Regulator Gene Family AT2G25180 44.488 3.36e-110 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lan1g1169 Response_reg 1.4e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1169 K14491 - gmx:100807822 707.983