Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1160 ATGGGTTCAGGGTCTAGTAGACTTGGGTCTCGTCAATCATCTACTACAAGGTATAGGGTTAACCGAAACCCTCGCTTCAATATTTCTTCTCTTCTATGCGGTTCATCCACTTCACGCTCCACCTATCAGATGGAAGAACATCCATCTGAACTTCGGGTAGATTCAGCAACAGATTTTGATGATGGAATTCAGAATGTTACTGAAGAATCATCTTTATTGTGTACAGAAACTAGAATTAGTGTCAGTCCCCATGCTGAAACTTCAACCTCATCTAATACTAGAACTGAGTTGTACAGGAATGTTACTGTTGATGGTTCTTCCCGAAATGTTGCCGCAAGTAGTCAGACGATGCGTTTGTCTGAATTTGAGGAGCTGGTCCCTCCTTATCAGGTAAGTGCTGGTCATAGTCGTCATGAGTCATATAGGGATAGTAGCAACACAGCTAGTACTTCATTTGTAGAACAGTCTTCAGATCCAGTCTCTGTAAATGTTTCTGCTAACAAGGATGTAATCAATAATGTTGATGATCTAGTGGTTAATGGCGTTTCTCAAATCTCTAGTGAGACAATGCATCCAAGGAGTTCAACCCCTCAAGAGCATGGAAATTCAAGTTCTGATGAATATTCTGTTGAGAATCAGACTAGTGCATTCATAGCTATCCATAGTTCTTCGTCTGACCCTGTTGCTCAAGCTTCCAACTTACCAGGAAATTCTCAATCACTAGAAGAAGAACCACGTCGGGAGACGATACCTTCAGGTTTAGGTATTCTTGTGTCCAACCGGGAGAGAGGGCAGGGAAGCGATGGTATGCTTCAAGTTGATGTGGTCACAATATCATCCAACATTTTGTCTGATCGCAATGCTGATGCCAATGGCCATGATGCTAGAAGGAGTGGTAGAAGATTATTTTGGGATGCCTTTTCACGACGTAGTTCTAGAAGGCTTGGTAATTCTGCGACAATGGTCTTCTCTGCTGGTGGTGCCGACGATCCAGAATCTCAGGATCGATGGCTTGTTGATTTTGGTGGTGATTTGTCAAATGATAGGGTTGGAGGCTCTTCTGGCTATATGGGCAGTAGAATTCACAGATTGAATGAAGGAATGAGGAACTCAAGATCTGAGATCTGGGAAAGACTTCGTGGTGGCCTTGATGAAATCAGTCAGTTGAATTCTCCATGTCCATTAGGACTCCATGCAGATGGCATGTGCTCATGTGACTCTTCCCCAATAGCTGAGGAATCTAGCACTCGAGCAAGCATTTCTAGAATAGTGATGCTAGCAGAGGCTCTGTTTGAGGTTTTAGATGAAATCCATCGGCAACCTGGATCACTTTCCCTATCCATGGCCTCACTCCCTGCGCCTGAATCAATCGTTGACTCTTTCCCTTTGAAGTCTCACAAAAAGGTTGATGCAGCTGATGATGGCAATGACACTGAACAATGTTACATATGCCTGGCGGAGTACGAAGAGGGGGATCAAATACGAGTTCTTCCTTGCAACCATGAATATCACATGATATGTGTTGATAAGTGGCTTAAAGAAATACATGGTGTATGCCCTCTCTGCCGTGGCAATGTTTGTGGAGGATTCACGGAGTCTGACACCCACTCGGAAGTGCCATCTCATTGA 1629 0.4389 MGSGSSRLGSRQSSTTRYRVNRNPRFNISSLLCGSSTSRSTYQMEEHPSELRVDSATDFDDGIQNVTEESSLLCTETRISVSPHAETSTSSNTRTELYRNVTVDGSSRNVAASSQTMRLSEFEELVPPYQVSAGHSRHESYRDSSNTASTSFVEQSSDPVSVNVSANKDVINNVDDLVVNGVSQISSETMHPRSSTPQEHGNSSSDEYSVENQTSAFIAIHSSSSDPVAQASNLPGNSQSLEEEPRRETIPSGLGILVSNRERGQGSDGMLQVDVVTISSNILSDRNADANGHDARRSGRRLFWDAFSRRSSRRLGNSATMVFSAGGADDPESQDRWLVDFGGDLSNDRVGGSSGYMGSRIHRLNEGMRNSRSEIWERLRGGLDEISQLNSPCPLGLHADGMCSCDSSPIAEESSTRASISRIVMLAEALFEVLDEIHRQPGSLSLSMASLPAPESIVDSFPLKSHKKVDAADDGNDTEQCYICLAEYEEGDQIRVLPCNHEYHMICVDKWLKEIHGVCPLCRGNVCGGFTESDTHSEVPSH* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1160 542 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 445 527 IPR013083 -
Lan1g1160 542 MobiDBLite consensus disorder prediction 186 210 - -
Lan1g1160 542 CDD mRING-H2-C3H2C2D_ZSWM2 480 523 - -
Lan1g1160 542 SMART ring_2 481 522 IPR001841 -
Lan1g1160 542 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 540 - -
Lan1g1160 542 Pfam Ring finger domain 480 523 IPR001841 -
Lan1g1160 542 ProSiteProfiles Zinc finger RING-type profile. 481 523 IPR001841 -
Lan1g1160 542 MobiDBLite consensus disorder prediction 131 159 - -
Lan1g1160 542 MobiDBLite consensus disorder prediction 143 159 - -
Lan1g1160 542 SUPERFAMILY RING/U-box 461 526 - -
Lan1g1160 542 MobiDBLite consensus disorder prediction 224 268 - -
Lan1g1160 542 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 540 - -
Lan1g1160 542 MobiDBLite consensus disorder prediction 1 21 - -
Lan1g1160 542 MobiDBLite consensus disorder prediction 224 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1160 Lan-Chr1 21606281 21610361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1160 401 536 C3H Transcription Factor Family AT5G45290 52.000 2.57e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1160 - - gmx:100783722 777.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1160 1 21606281 21610361 Lan1g0280 1 2055128 2059904 LSH