Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1153 ATGTCATCCGAGATCGAGGTTGTTGACGAGGTTCAATCCCGAGATCAGCAATTGCCGACGGCTTCTTCTTCGTCCTCTACCGCCGGTGAAGTATCGGAGGAGAGCCTCCGCAATGATGTGTACACGGCGGCGGCGTACGGGGATTTGGAGAAGCTGCATCGATTGGTGGAGCAAGAGGGTTGTACCGTCACGGAACCAGATGGATTAGGTTACTATGCGCTTCAGTGGGCTGCACTCAATAATCGCACTGCCGCTGCTCAGTACATCATTGAGCATGGGGGAGATGTAAATGCAGCAGATCATACTGGCCAAACAGCATTACATTGGAGTGCGGTTCGAGGTGCTATCCAGGTTGCAGAGCTTTTACTCCAAGAGGGTGCTCGAGTGAACGCTGCTGATATGAATGGTTATCAGACAACACATGTTGCTGCTCAATATGGTCAGACGGCTTTCCTTTACCACGTTGTTTCAAAATGGAATGCTGACCCCGATGTTCCTGATAATGATGGAAGAAGTCCCTTGCATTGGGCTGCTTACAAAGGTTTTGCCGATTCTATACGTCTACTTTTATTTCTTGATGCACATAGGGGACGTCAAGATAAAGAGGGTTGCACGCCCCTTCATTGGGCTGCTATCAGGGGTAACATGGAGGCCTGTACTGTGTTAGTACAGGCTGGCAAGAAGGAAGACCTGATGGTCACTGATAATACTGGCCTTACACCAGCACAGCTTGCATCAGATAAGAATCACAGACAAGTTGCTTTTTTCCTTGGAAATGCTCGAAGACTGCTTGACAAACGCTTTGACGGGAACAGCCGCCTTGGAAAGATTTCCAAATTAGGACTTGCTCCTGTATTATGGTGTATAATTTTTGTGCTCCTGGTCACCTATATTCATTCGGTCATCTTGGCAACAAATCTGCCGAAGCTGACAGCTGCAGCTGCCCTTCTCGCATGGTTCGGAGTTTTACTTGCAACTGTGGGATTGGCTATGTTTTACAAGTGTAGCAGCAAGGATCCAGGTTACATCAAAATGAATATGCATGACACTGAGAATATGAAAGATGATGAGCCTCTCTTGAAGATTGAGATAAATAATCCTGCTTTGTTAGCTGGAAATTGGTCCCAGCTTTGTGCAACATGCAAGATTGTCAGACCTCTTCGTGCGAAACACTGTTCTACCTGTGATCGTTGTGTGGAACAATTTGATCATCATTGTCCTTGGGTTTCAAATTGCATTGGCAAGAAAAACAAATGGGATTTCTTTGTTTTTCTTGTTCTGGAAGTTTCAGCAATGTTGGTTACTGGTGGAGTTTCTCTTACAAGAGTATTGACTGATCCACTTGCTCCTTCTTCATTTGGAGCATGGATTCAGTATGTTGGTAAGAATCACGTTGGTGCAATATCATTTTTAATTGCTGATTTTTTCCTATTCTTCGGTGTGTTCGCTTTGACAGTTGTTCAGGCTAGTCAGATATCGCGCAATATCACGACAAATGAAATGGCAAATGCAATGCGGTATAGCTATCTCAGAGGTCCAGGTGGTAGATTTAGAAACCCATATGATCATGGTATCAAGAAGAACTGTTCCGATTTCTTGATCAATGGATACAATGAAGACGTGGAGTGCATCGAAGAAGTAGGTAATTCAGAGGAGGGTATAGGAATGGAGCCCATTGCAAGGAGCTCAAACTTAACAAATGGAGACTCACATTCTCATTTTGATCATACAAAGGACAATAGAAATGGCCATGTTGTTATTGATGTGAATTCCAACACTACCAACTCCAAAACACACCATGGTCATATTAATGGTCACATTCATTCTTCACATTGTAGCCATGATAAGAATAATAATAATAATAATAGTAGTCAAGGCAAAACTAAAAATGAGAACATTCCAAAGGGCTTAGGTCTTGGCCTTGGACGTAATGCTAGATCTGTTACACCCTCGTGA 1956 0.4381 MSSEIEVVDEVQSRDQQLPTASSSSSTAGEVSEESLRNDVYTAAAYGDLEKLHRLVEQEGCTVTEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLQEGARVNAADMNGYQTTHVAAQYGQTAFLYHVVSKWNADPDVPDNDGRSPLHWAAYKGFADSIRLLLFLDAHRGRQDKEGCTPLHWAAIRGNMEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLLDKRFDGNSRLGKISKLGLAPVLWCIIFVLLVTYIHSVILATNLPKLTAAAALLAWFGVLLATVGLAMFYKCSSKDPGYIKMNMHDTENMKDDEPLLKIEINNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWDFFVFLVLEVSAMLVTGGVSLTRVLTDPLAPSSFGAWIQYVGKNHVGAISFLIADFFLFFGVFALTVVQASQISRNITTNEMANAMRYSYLRGPGGRFRNPYDHGIKKNCSDFLINGYNEDVECIEEVGNSEEGIGMEPIARSSNLTNGDSHSHFDHTKDNRNGHVVIDVNSNTTNSKTHHGHINGHIHSSHCSHDKNNNNNNSSQGKTKNENIPKGLGLGLGRNARSVTPS* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1153 651 Pfam Ankyrin repeats (3 copies) 42 133 IPR002110 GO:0005515
Lan1g1153 651 Pfam Ankyrin repeats (3 copies) 186 257 IPR002110 GO:0005515
Lan1g1153 651 ProSiteProfiles Ankyrin repeat profile. 69 101 IPR002110 GO:0005515
Lan1g1153 651 ProSiteProfiles Ankyrin repeat profile. 102 134 IPR002110 GO:0005515
Lan1g1153 651 Gene3D - 6 266 IPR036770 -
Lan1g1153 651 PANTHER PROTEIN S-ACYLTRANSFERASE 24 1 602 - -
Lan1g1153 651 ProSiteProfiles Ankyrin repeat region circular profile. 102 133 - -
Lan1g1153 651 MobiDBLite consensus disorder prediction 584 600 - -
Lan1g1153 651 Pfam DHHC palmitoyltransferase 376 503 IPR001594 GO:0016409
Lan1g1153 651 SUPERFAMILY Ankyrin repeat 39 258 IPR036770 -
Lan1g1153 651 MobiDBLite consensus disorder prediction 614 631 - -
Lan1g1153 651 ProSiteProfiles Ankyrin repeat region circular profile. 202 226 - -
Lan1g1153 651 ProSiteProfiles DHHC domain profile. 376 426 - -
Lan1g1153 651 ProSiteProfiles Ankyrin repeat region circular profile. 169 190 - -
Lan1g1153 651 PANTHER - 1 602 - -
Lan1g1153 651 ProSiteProfiles Ankyrin repeat profile. 169 201 IPR002110 GO:0005515
Lan1g1153 651 SMART ANK_2a 169 201 IPR002110 GO:0005515
Lan1g1153 651 SMART ANK_2a 202 233 IPR002110 GO:0005515
Lan1g1153 651 SMART ANK_2a 237 266 IPR002110 GO:0005515
Lan1g1153 651 SMART ANK_2a 69 98 IPR002110 GO:0005515
Lan1g1153 651 SMART ANK_2a 102 131 IPR002110 GO:0005515
Lan1g1153 651 SMART ANK_2a 35 65 IPR002110 GO:0005515
Lan1g1153 651 ProSiteProfiles Ankyrin repeat profile. 202 234 IPR002110 GO:0005515
Lan1g1153 651 MobiDBLite consensus disorder prediction 13 33 - -
Lan1g1153 651 MobiDBLite consensus disorder prediction 560 651 - -
Lan1g1153 651 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1153 Lan-Chr1 21545024 21552163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1153 90 174 Acyl Lipid Metabolism Gene Families AT5G53470 43.529 8.93e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1153 K20032 - gmx:100777470 1107.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1134 12 17689696 17696666 Lan1g1153 1 21545024 21552163 LSH
Lan1g1153 1 21545024 21552163 Lan1g0269 1 1976124 1983101 LSH