Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1134 ATGGAGATGGAGAAGAAGTGTGGTTGTTGGTCTGTGTTGAAACGTGGTGTTAGAGGTTCTCCTTGTAAACCTTCCTCTGCTTCACCTAACACTATCCCTCGTACTAGTCTTGTTTATGATGCAGCAACTGAGACAAGATATCTGAATGCAAGCAATAGAGAACCTTGTCCTCCCAACGAAGCTCGAATATCTTCTGATAATCCTGATCCCCCACCTCAGGAAAATAGGGCTCCTTGCCAGCTCCTCCAATTCACATTTCAAGAACTAAAATCTGCAACCGGAAATTTCAGACCTGATAGCATTCTTGGGGAGGGTGGTTTTGGTTATGTTTTCAAAGGATGGATCGAGGAAGATGGAACAGCTCCGGCAAAACCTGGATCAGGGATCACGGTGGCTGTCAAAAGCTTGAAGCCAGATGGTCTTCAAGGTCATAGAGAATGGGTGGCTGAAGTTCACTTTCTTGGACAGCTTCATCATGCTAACCTTGTGAAACTTATCGGCTACTGCATTGAAGATGATCAGAGGCTTCTTGTTTATGAGTTTATGACCCGTGGAAGTCTAGAAAATCATCTATTCAGAAGAACCGTACCTCTTCCATGGTCCAACAGGGTTAAGATTTCTCTTGGTGCAGCAAAAGGACTGGCCTTCCTCCATAATGGTCCAGAACCAGTCATTTATAGAGATTTTAAGACATCAAACATTTTACTTGATACGGAGTATAATGCGAAGCTTTCGGATTTTGGTCTAGCAAAAGCAGGGCCTCAAGGAGACAAGACACATGTTTCTACAAGAGTTGTTGGAACTTATGGTTATGCTGCTCCAGAATATGTTATGACAGGACACTTGACAGCTAAAAGTGATGTTTATAGCTTTGGAGTTGTGTTACTCGAGATTTTAACAGGAAGAAGATCGATGGACAAGAAGCGCCCAAGTGGAGAACAAAATCTTGTTTCGTGGGCTAGGCCATATTTAGCGGACAAGAGAAAAATATACCAACTTGTGGATCCTCGCTTGGAACTACATTATTCTCTAAAAGGGGTGCAGAAAATTTCCCAGTTAGCTTATAATTGCCTCAGTAGAGACCCCAAATGCCGTCCTAACATGGATGAAGTTGTGAAGGCTCTAACTCCATTGCAGGATTTTAACGACCTTGCAATCTTGTCTTATCACTCTCGTTTATCTCAACAAGGGAGAAGAAAAAAGAAATCAGATGGAAATCCAATGGTCACCTACACACAATCCAAGAGCATGAGGGCTTCTCCTTTGAATACCGGCAAGCAGCATCGCGCTGCGAAGTGA 1299 0.4326 MEMEKKCGCWSVLKRGVRGSPCKPSSASPNTIPRTSLVYDAATETRYLNASNREPCPPNEARISSDNPDPPPQENRAPCQLLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEEDGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVHFLGQLHHANLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTVPLPWSNRVKISLGAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGHLTAKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLADKRKIYQLVDPRLELHYSLKGVQKISQLAYNCLSRDPKCRPNMDEVVKALTPLQDFNDLAILSYHSRLSQQGRRKKKSDGNPMVTYTQSKSMRASPLNTGKQHRAAK* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1134 432 Gene3D Transferase(Phosphotransferase) domain 1 182 392 - -
Lan1g1134 432 ProSitePatterns Protein kinases ATP-binding region signature. 102 134 IPR017441 GO:0005524
Lan1g1134 432 MobiDBLite consensus disorder prediction 406 423 - -
Lan1g1134 432 ProSiteProfiles Protein kinase domain profile. 96 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan1g1134 432 Pfam Protein tyrosine and serine/threonine kinase 100 375 IPR001245 GO:0004672|GO:0006468
Lan1g1134 432 PANTHER OS01G0588500 PROTEIN 73 402 - -
Lan1g1134 432 PANTHER OS01G0588500 PROTEIN-RELATED 73 402 - -
Lan1g1134 432 Gene3D Phosphorylase Kinase; domain 1 72 181 - -
Lan1g1134 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Lan1g1134 432 SUPERFAMILY Protein kinase-like (PK-like) 79 381 IPR011009 -
Lan1g1134 432 MobiDBLite consensus disorder prediction 50 77 - -
Lan1g1134 432 MobiDBLite consensus disorder prediction 392 432 - -
Lan1g1134 432 CDD STKc_IRAK 102 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1134 Lan-Chr1 21394205 21398105 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1134 84 375 Glycoside Hydrolase AT3G07070 55.405 8.12e-111 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lan1g1134 PK_Tyr_Ser-Thr 2.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1134 - - aprc:113848012 814.683