Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1111 ATGAGTTTTTTCGATGATTTGCCACCGTATGTGCCGTCACCGCCGCCATATGCCGCCGCCCAAGCAACCGATGCCATTGTTTTAAGCCTTGAACAACAATTCCCAGAGAACAATGAATCATTCACCCCACATTCACCATTCAATGATCATGATCAACCTTCTTCATTCAAGAGACCAAGAACTTCTTCTGAGAGTAGCAACCACTCCAATGCAGTTCAATTCCCTCCGAGAATGACGACGATGCATTCGCAGAACAACAACAATAATGCATCCAACAAAGGTGGAAGTGGAACTGGTCACATTTTCTTCAAGACTCGAATGTGTGCAAAATTCAGACTTGGCTCCTGTAGGAACGGTGAGAATTGTAACTTTGCACATGGGGTTGAAGATATGAGGCAGCCGCCGCCGAATTGGCAGGAACTTGTTGGCAATGCTGGCAGCAATGAAGAACAACAGCAGCAGCGGCCTTCGGGGAATTGGGACGATGATCAGAAAATTATACATAAGATGAAGCTGTGCAAGAAGTATTATAATGGAGAAGAATGTCCTTTTGGTGAAAGGTGTAATTTTCTTCATGAAGACCCTGCCAAGTTTCGGGATGATTCTGGGAGGATTAGGGAGAGTTCAGCAATAAGCATTGGGACAAATGGATCGCCGAAGTCCTACAGGGATGGCTATTATAATAATTCGGAAACTAGTAAGGCCGTGACCGCGAATGTTGGTATAAATGCTTATAGGGGAAATGTGAGGTCGACTTTTTGGAAGACTAAGCTTTGTATTAAGTGGGAGACTACAGGTCACTGCCCTTTTGGGGATGATTGTCACTTTGCTCATGGCCAATCAGAGTTGCATGTTCTTGGCGGACGCACTGAAACAGAAGCTGCAGGTGCTATTCCAATTTCAACTTATGCCACCGTTCCAACATTGCCAAAAGTTACATCTGTTCCTTCCATCGATGCCGCACCTGCTCCTAGCAACATAGCAAGCCCACCTCTGGCAAATGAAGTGGAGCAAGGCAAGAAAAGTTTATTGAAGTGGAAAGGACCAAAGAAGATAAATCGAATTTATGCGGATTGGCTTGACGATTTTCCACTCGTCCAAAATGTGGCAAATGGCGCGGAAACCTGA 1128 0.4521 MSFFDDLPPYVPSPPPYAAAQATDAIVLSLEQQFPENNESFTPHSPFNDHDQPSSFKRPRTSSESSNHSNAVQFPPRMTTMHSQNNNNNASNKGGSGTGHIFFKTRMCAKFRLGSCRNGENCNFAHGVEDMRQPPPNWQELVGNAGSNEEQQQQRPSGNWDDDQKIIHKMKLCKKYYNGEECPFGERCNFLHEDPAKFRDDSGRIRESSAISIGTNGSPKSYRDGYYNNSETSKAVTANVGINAYRGNVRSTFWKTKLCIKWETTGHCPFGDDCHFAHGQSELHVLGGRTETEAAGAIPISTYATVPTLPKVTSVPSIDAAPAPSNIASPPLANEVEQGKKSLLKWKGPKKINRIYADWLDDFPLVQNVANGAET* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1111 375 Pfam CCCH-type zinc finger 171 192 IPR041367 -
Lan1g1111 375 Pfam CCCH-type zinc finger 106 127 IPR041367 -
Lan1g1111 375 MobiDBLite consensus disorder prediction 139 162 - -
Lan1g1111 375 SUPERFAMILY CCCH zinc finger 251 284 IPR036855 GO:0046872
Lan1g1111 375 PANTHER CCCH ZINC FINGER/TIS11-RELATED 16 364 IPR045877 GO:0003729
Lan1g1111 375 SMART c3hfinal6 167 194 IPR000571 GO:0046872
Lan1g1111 375 SMART c3hfinal6 253 280 IPR000571 GO:0046872
Lan1g1111 375 SMART c3hfinal6 102 128 IPR000571 GO:0046872
Lan1g1111 375 MobiDBLite consensus disorder prediction 36 97 - -
Lan1g1111 375 MobiDBLite consensus disorder prediction 36 50 - -
Lan1g1111 375 ProSiteProfiles Zinc finger C3H1-type profile. 167 195 IPR000571 GO:0046872
Lan1g1111 375 SUPERFAMILY CCCH zinc finger 167 194 IPR036855 GO:0046872
Lan1g1111 375 Gene3D - 164 196 - -
Lan1g1111 375 Gene3D - 247 285 - -
Lan1g1111 375 Gene3D - 97 133 - -
Lan1g1111 375 SUPERFAMILY CCCH zinc finger 100 133 IPR036855 GO:0046872
Lan1g1111 375 MobiDBLite consensus disorder prediction 140 160 - -
Lan1g1111 375 MobiDBLite consensus disorder prediction 58 97 - -
Lan1g1111 375 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 254 280 IPR000571 GO:0046872
Lan1g1111 375 ProSiteProfiles Zinc finger C3H1-type profile. 102 129 IPR000571 GO:0046872
Lan1g1111 375 ProSiteProfiles Zinc finger C3H1-type profile. 253 281 IPR000571 GO:0046872
Lan1g1111 375 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 16 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1111 Lan-Chr1 21197313 21200132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1111 253 283 C3H Transcription Factor Family AT1G68200 61.290 2.52e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan1g1111 zf-CCCH 5.2e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1111 - - lang:109345375 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1181 12 18002691 18005005 Lan1g1111 1 21197313 21200132 LSH
Lan1g1111 1 21197313 21200132 Lan1g0215 1 1558910 1564084 LSH