Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1104 ATGGAGAAGAAAAAAGTGTCAGTTCCACTTGTGTGCCATGGTCACTCTCGCCCAGTGGTTGATCTCTTCTACAGTCCCGTTACCCCCGATGGCTTCTTCCTCATCAGCGCAAGCAAAGATTCTAGTCCCATGCTCAGAAATGGTGAGACTGGGGATTGGATTGGAACATTTGAAGGTCATAAAGGTGCTGTGTGGAGTTGCTGCTTGGATACTAATGCGTTGCGTGCTGCATCTGCTTCTGCTGATTTCTCAACGAAAGTTTGGGATGCATTAACGGGAGATGAATTGCACTCTTTTGAACATAAGCACATTGTTCGAGCATGTGCTTTTTCTGAGGATACACACCTCTTGCTCACTGGAGGAGTAGAGAAAATTCTTCGAATCTATGATATGAATCAGCCTGATGCACCACCCAGAGAAGTGGATAAATCCCCGGGTTCCATCAGAACTGTTGCATGGCTTCATAGTGACCAGACAATTTTGAGTTCTTGTAGTGATATGGGAGGTGTCAGGTTATGGGATGTAAGGAGTGGCAAAATAGTCCAGACTCTTGAGACCAAGTCATCTGTGACAAGCGCTGAAGTGAGTCAGGATGGCCGCTATATTACAACTGTTGATGGTTCCACTGTCAAGTTTTGGGATGCAAATCACTATGGATTGGTAAAGAGCTATGATATGCCCTGCACCATGGAATCCGCTTCATTGGAGCCAAAGTATGGGAACAAGTTCGTTGCTGGGGGAGAAGACATGTGGGTTCATGTTTTCGATTTCCATACAGGCAATGAGATTGCATGCAACAAGGGCCATCATGGTCCTGTCCACTGTGTCCGTTTCTCTCCTGGAGGAGAATCATATGCCTCAGGATCTGAGGATGGAACCATCAGAATATGGCAGACAGGCCCATTGTCTGATGATGCATCATCTGAGGCCTTACCTGCAAACGAATCAATTGAAAAGGCGATGAAGGTAACTGCCGATGAGGTTTCACATAAGATACAGGGTTTTCATATTACAGATGAGGGGAAATCCAAAGAAAAGGAAGAGGCTGTGGAGTAA 1056 0.4583 MEKKKVSVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSTKVWDALTGDELHSFEHKHIVRACAFSEDTHLLLTGGVEKILRIYDMNQPDAPPREVDKSPGSIRTVAWLHSDQTILSSCSDMGGVRLWDVRSGKIVQTLETKSSVTSAEVSQDGRYITTVDGSTVKFWDANHYGLVKSYDMPCTMESASLEPKYGNKFVAGGEDMWVHVFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPLSDDASSEALPANESIEKAMKVTADEVSHKIQGFHITDEGKSKEKEEAVE* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1104 351 Pfam WD domain, G-beta repeat 94 130 IPR001680 GO:0005515
Lan1g1104 351 Pfam WD domain, G-beta repeat 54 89 IPR001680 GO:0005515
Lan1g1104 351 Pfam WD domain, G-beta repeat 265 297 IPR001680 GO:0005515
Lan1g1104 351 Pfam WD domain, G-beta repeat 179 214 IPR001680 GO:0005515
Lan1g1104 351 MobiDBLite consensus disorder prediction 332 351 - -
Lan1g1104 351 Gene3D - 9 324 IPR015943 GO:0005515
Lan1g1104 351 PANTHER OS02G0205400 PROTEIN 1 347 - -
Lan1g1104 351 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 347 - -
Lan1g1104 351 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 298 - -
Lan1g1104 351 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 298 IPR001680 GO:0005515
Lan1g1104 351 CDD WD40 14 298 - -
Lan1g1104 351 ProSiteProfiles Trp-Asp (WD) repeats profile. 57 98 IPR001680 GO:0005515
Lan1g1104 351 SUPERFAMILY WD40 repeat-like 5 300 IPR036322 GO:0005515
Lan1g1104 351 SMART WD40_4 217 256 IPR001680 GO:0005515
Lan1g1104 351 SMART WD40_4 134 174 IPR001680 GO:0005515
Lan1g1104 351 SMART WD40_4 50 89 IPR001680 GO:0005515
Lan1g1104 351 SMART WD40_4 5 47 IPR001680 GO:0005515
Lan1g1104 351 SMART WD40_4 92 130 IPR001680 GO:0005515
Lan1g1104 351 SMART WD40_4 259 298 IPR001680 GO:0005515
Lan1g1104 351 SMART WD40_4 177 214 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1104 Lan-Chr1 21137855 21141517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1104 9 296 Eukaryotic Initiation Factors Gene Family AT2G46290 29.245 2.77e-38 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1104 K13137 - gmx:100782712 674.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1190 12 18052489 18053547 Lan1g1104 1 21137855 21141517 LSH
Lan1g1104 1 21137855 21141517 Lan1g0199 1 1456378 1459998 LSH