Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1102 ATGGCATCATCATCATCACCATTATCCCAACTAAGCCTTGATTCTAAGCCCCATATGTTACTCAAATCATTTGTGGATCAGAATTGTGATCAAACCTACAAGCTTGAAGAGTTCCTTTCTCGACTTGAGGAAGAACAACTCAAGATTGATGCTTTCAAGCGTGAGCTTCCTCTCTGCATGCAACTTCTCACTAATGCTATGGAGGCTTCAAGGCAGCAACTTCAGGTGTGCAGAGTAAATCAAGGGACAAGAACAGTTCTGGAAGAGTTCATACCAATAAAACATTCAACCTCTGATAGCAGTTCTTCTGAAAAGGAAACAACCATAACTGATAACAAGGCAAATTGGATGACTTCTGCTCAGTTATGGAGCCAAGCAAGCGAAGGAACAAATCAACAATCCACAATAATCACACTATCTCCTAAAGAAACAGCTGTTAATATTGGCTTCAGCATGAGCCCTAATATAGTTTCAGACAACAATAACAAACGTATGAATCATAATGGTGGAGAAGGAGGAGGAGCTTTCCTTCCATTCTCAAAAGAAAGAAATTCCCCCCAAGTTTCTGCTTTGAGGGGTCTTCCTGAATTGGCTCTTAATGAGGATAAGAAATGTGGAGAGCTATGTCAGAAGAAGAGGGAGAATTCAAGCAACAGTGGCAGTGATGTAATGATAGTTGATCAAGGAAAAGGGTCCTCTCATGCACAAAACACAACAACCACTACTACTCAAACTCATAGGAAAGTGAGAAGGTGTTGGTCACCTGAATTGCACCGTCGATTTGTTAATGCTCTTCAAATGCTTGGTGGTTCTCAAGTGGCCACTCCAAAACAGATTAGGGAGTTGATGAAGGTTGAGGGTTTGACCAATGATGAAGTTAAAAGCCATCTCCAGAAATATCGGCTTCACACCAGAAGACCCAGTCCAAGTCCACAAACTGGTGCACCACCACAACTTGTGGTCCTAGGAGGAATCTGGGTCCCACCAGAATACACCACCGCAGGCGCGCCTACACTCTATGGCACCCATGCACCACCACCCCACTACTCAGTACCTCAAGAGTTCTACACTGCGGCGTCGCCGCAGCAGCTGCTTCCACCTCCTCAGAGCCACGACTTCTTGCATCAACATCACCAGAACCACCATGAACTCATGCAGCACGTGTACAAGACGGCGCAGCAGAGGCAAAGTTCGCCGGAATCTGATGTTGAAGGAGGGTCAGAGAGTATAGAGGATGGGAAATCGGAGAGTAGCAGCTGGAAGGGGGAGAGTGGTGAGAATGAAGGAGAGATGAAAAGGGTGCAGATTGAAGAGAGTAATGGGAGTGAGATTACTCTCAAATTTTAG 1347 0.4514 MASSSSPLSQLSLDSKPHMLLKSFVDQNCDQTYKLEEFLSRLEEEQLKIDAFKRELPLCMQLLTNAMEASRQQLQVCRVNQGTRTVLEEFIPIKHSTSDSSSSEKETTITDNKANWMTSAQLWSQASEGTNQQSTIITLSPKETAVNIGFSMSPNIVSDNNNKRMNHNGGEGGGAFLPFSKERNSPQVSALRGLPELALNEDKKCGELCQKKRENSSNSGSDVMIVDQGKGSSHAQNTTTTTTQTHRKVRRCWSPELHRRFVNALQMLGGSQVATPKQIRELMKVEGLTNDEVKSHLQKYRLHTRRPSPSPQTGAPPQLVVLGGIWVPPEYTTAGAPTLYGTHAPPPHYSVPQEFYTAASPQQLLPPPQSHDFLHQHHQNHHELMQHVYKTAQQRQSSPESDVEGGSESIEDGKSESSSWKGESGENEGEMKRVQIEESNGSEITLKF* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1102 448 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 248 303 IPR006447 GO:0003677
Lan1g1102 448 MobiDBLite consensus disorder prediction 212 247 - -
Lan1g1102 448 Pfam Myb-like DNA-binding domain 250 301 IPR001005 -
Lan1g1102 448 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 9 448 IPR044787 GO:0003700|GO:0006355
Lan1g1102 448 MobiDBLite consensus disorder prediction 211 247 - -
Lan1g1102 448 MobiDBLite consensus disorder prediction 361 448 - -
Lan1g1102 448 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 9 448 - -
Lan1g1102 448 Coils Coil 35 55 - -
Lan1g1102 448 MobiDBLite consensus disorder prediction 407 437 - -
Lan1g1102 448 Gene3D - 247 305 - -
Lan1g1102 448 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 245 305 IPR017930 -
Lan1g1102 448 SUPERFAMILY Homeodomain-like 245 306 IPR009057 -
Lan1g1102 448 MobiDBLite consensus disorder prediction 386 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1102 Lan-Chr1 21131759 21134437 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1102 1 357 G2-like Transcription Factor Family AT2G03500 52.041 5.27e-108 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lan1g1102 Myb_DNA-binding 2.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1102 - - gmx:100807925 520.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1102 1 21131759 21134437 Lan1g0194 1 1414050 1416944 LSH