Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1085 ATGACTCTTGAAATAGACAAATCTTATCACAATCAAGAGGGTAGTGTTATGAAGATTCAAAAAGCATTAAACAAGAGTGACAAAAAGTTCATTGGTGTGAGAAAAAGACCTTCAGGAAGATGGACTTCTGAGATAAAAGACTCATCACAGAAACTGAGGCTTTGGTTAGGAACTTTTGACAAAGAAGAAGAAGCTGCTTTGGCTTATGATTGTGCTGCAAGGCTTCTTAGAGGAAAAAATGCCAAAACAAATTTCCCAATTACCCAAGGAACCATGAACACCCATCATGAGAAAAACTGCATCAATATTATGGGAAAGAACCCTAGGGCTTTCCAACTTCTCAAGCATCATGCAGTCATGAAAAACCATGCAGTTTCTTCATCCTTTTTTTCCACAATCATGCCTTGGAAAAATGAGACAATGAGAGATGAGTTTGACATGATTGTTGAGGAGAATATAGTGTGTTCCATTCCTGAAAAAGGTTGTGAAGGGTGCTATGGAGTTTCATTTGGAAGTTCTAGGGTTTATTCTTCTGTTGTGGTAGCTCCTTCTTTCAGTGCCTCACAATTTCAATCAAGAGAAGTTCATGAACAAACCTTTTAA 603 0.3765 MTLEIDKSYHNQEGSVMKIQKALNKSDKKFIGVRKRPSGRWTSEIKDSSQKLRLWLGTFDKEEEAALAYDCAARLLRGKNAKTNFPITQGTMNTHHEKNCINIMGKNPRAFQLLKHHAVMKNHAVSSSFFSTIMPWKNETMRDEFDMIVEENIVCSIPEKGCEGCYGVSFGSSRVYSSVVVAPSFSASQFQSREVHEQTF* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1085 200 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Lan1g1085 200 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110-LIKE 2 194 - -
Lan1g1085 200 Pfam AP2 domain 29 78 IPR001471 GO:0003700|GO:0006355
Lan1g1085 200 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Lan1g1085 200 Gene3D AP2/ERF domain 28 88 IPR036955 GO:0003700|GO:0006355
Lan1g1085 200 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 2 194 - -
Lan1g1085 200 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Lan1g1085 200 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Lan1g1085 200 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Lan1g1085 200 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1085 Lan-Chr1 20970514 20971229 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1085 29 85 AP2-EREBP Transcription Factor Family AT5G19790 68.421 2.19e-23 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lan1g1085 AP2 6.8e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1085 - K09286 gmx:100807374 257.684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1085 1 20970514 20971229 Lan1g1085 1 20970514 20971229 ECH