Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1083 ATGGGTGGAAGCGATAGCGAGGTAGAGAAGACGGCGCAGAAAGAGAGAGAGAAGAAGAAGGTGCTTGCTTTGGCACCAATTGCAAAACCTCTCGCTGGGAAGAAACTATCGAAGCGAACTCTTAAGCTTGTTCGTAAAGCTGCTGAACACAAATGCTTAAAGAGAGGAGTGAAAGAGGTTGTTAAAAGCATAAGACGTGGTCATAAAGGGTTATGTGTTATCGCTGGGAACATATCACCCATTGATGTTATTACTCATGTTCCTATTCTGTGTGAAGAATCTGAAATTCCATATGTTTATGTTCACTCTAAAGAAGAACTTGCAACTGCAGGAGCAACAAAGAGACCAACTTGCTGTGTTCTGGTAACGACCAAGCCTGCAAAGGGTGAACTAGACCAAGGGGAACAAGAGAAACTGAAGTCAGATTATGATCAAGTTGCAGCGGAAATTTCTGAGATTACAGCTTCTCTTTTTTGA 477 0.4235 MGGSDSEVEKTAQKEREKKKVLALAPIAKPLAGKKLSKRTLKLVRKAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESEIPYVYVHSKEELATAGATKRPTCCVLVTTKPAKGELDQGEQEKLKSDYDQVAAEISEITASLF* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1083 158 PRINTS High mobility group-like nuclear protein signature 26 39 IPR002415 GO:0003723|GO:0005730
Lan1g1083 158 PRINTS High mobility group-like nuclear protein signature 39 54 IPR002415 GO:0003723|GO:0005730
Lan1g1083 158 PRINTS High mobility group-like nuclear protein signature 56 66 IPR002415 GO:0003723|GO:0005730
Lan1g1083 158 PRINTS High mobility group-like nuclear protein signature 100 112 IPR002415 GO:0003723|GO:0005730
Lan1g1083 158 PRINTS Ribosomal protein L7A/RS6 family signature 53 67 IPR018492 -
Lan1g1083 158 PRINTS Ribosomal protein L7A/RS6 family signature 72 85 IPR018492 -
Lan1g1083 158 PRINTS Ribosomal protein L7A/RS6 family signature 88 98 IPR018492 -
Lan1g1083 158 PRINTS Ribosomal protein L7A/RS6 family signature 98 112 IPR018492 -
Lan1g1083 158 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 3 157 - -
Lan1g1083 158 Gene3D - 17 154 IPR029064 -
Lan1g1083 158 SUPERFAMILY L30e-like 23 133 IPR029064 -
Lan1g1083 158 PANTHER - 3 157 - -
Lan1g1083 158 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 41 125 IPR004038 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1083 Lan-Chr1 20958350 20959870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1083 53 125 Cytoplasmic Ribosomal Protein Gene Family AT2G47610 32.877 7.92e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1083 K11129 - gmx:100305515 277.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1083 1 20958350 20959870 Lan1g1083 1 20958350 20959870 ECH