Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1082 ATGGGGTGTTCATTTTCTGGTTTAAATGCATTATCCGACACCGTTAACGGCGGTGCTGACGTGTGGATAAACAACAACCGTTTCCGTGTGGTGAAGCAACTCGGTGAAGGTGGCTCCGCTTATATCTTCGCCGTGAAAGAGATTCTCTCTGATTCAGCTTCTTCTGCCTTCGCTTCTAATCTCAATTCCTCAACTCATCTCTCCGATGACGGAACTTATGCTATGAAAAAGGTCCTCATTCAGAAAGATGAACAGCTGGAGTTGGTAAAGGAGGAGATTCGTGTTTCATCTCTGTTTGATCACCCAAATCTGCTTCCTCTTCTTGATCATGCAATCATTTCTGTTAAGCCTACCCAAGAAAAATCTTGGACCAATGAGGCATATTTGTTATTTCCAGCTCATTTGGAGGGAACATTGCTTGACAGTGCCAAAACATTGAAAGCCAAGAAGGAGTTCTATTCTACCTCAGATGTTCTTCAAATATTTCGCCAGCTTTGTGCCGGACTGAAGCATATGCACAGTTTAGATCCTCCATATGCTCATAATGATGTCAAACCTGGCAATGTTCTCATAACACGTAGAAAAGGACAACCACCTCTTGCCATACTGATGGATTTTGGCAGTGCTCGTCCTGCCAGGAAGCAAATTAGATCCAGACAAGAGGCGCTCCAGTTGCAGGAATGGGCATCTGAACACTGCTCTGCTCCTTTCCGAGCTCCTGAACTGTGGGATTGCCCAAGCCATGCTGATATAGATGAGAGGACTGACGTTTGGTCGCTAGGATGCACATTGTTTGCGATAATGTATGGGGTATCACCATTCGAATATGCACTTGAAGAAACTGATGGAAACCTGCAATCGGCTATCGTAAATGCTCAGTTCAAATGGCCAGCTGGACCTAAGCCTGCATTTCCAGATGCTCTTCATCAGTTTGTGTCATGGATGCTTCAACCACAGGCTGCTGTCCGGCCCCATGTAGACGATATCCTTATCCATGTTGACAAGTTGATCGCAAAGTTCTCTCAGTGA 1029 0.4529 MGCSFSGLNALSDTVNGGADVWINNNRFRVVKQLGEGGSAYIFAVKEILSDSASSAFASNLNSSTHLSDDGTYAMKKVLIQKDEQLELVKEEIRVSSLFDHPNLLPLLDHAIISVKPTQEKSWTNEAYLLFPAHLEGTLLDSAKTLKAKKEFYSTSDVLQIFRQLCAGLKHMHSLDPPYAHNDVKPGNVLITRRKGQPPLAILMDFGSARPARKQIRSRQEALQLQEWASEHCSAPFRAPELWDCPSHADIDERTDVWSLGCTLFAIMYGVSPFEYALEETDGNLQSAIVNAQFKWPAGPKPAFPDALHQFVSWMLQPQAAVRPHVDDILIHVDKLIAKFSQ* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1082 342 Pfam Protein kinase domain 64 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan1g1082 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Lan1g1082 342 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 1 341 - -
Lan1g1082 342 Gene3D Phosphorylase Kinase; domain 1 10 132 - -
Lan1g1082 342 SMART serkin_6 28 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan1g1082 342 ProSiteProfiles Protein kinase domain profile. 28 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan1g1082 342 SUPERFAMILY Protein kinase-like (PK-like) 20 332 IPR011009 -
Lan1g1082 342 PANTHER PHOSPHORYLASE KINASE, GAMMA CATALYTIC SUBUNIT-RELATED 1 341 - -
Lan1g1082 342 CDD STKc_16 27 338 - -
Lan1g1082 342 Gene3D Transferase(Phosphotransferase) domain 1 135 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1082 Lan-Chr1 20952671 20956396 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1082 72 332 EF-hand Containing Proteins AT4G04710 25.000 4.40e-13 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Lan1g1082 Pkinase 4.2e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1082 K08856 - gmx:100803659 588.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1082 1 20952671 20956396 Lan1g1082 1 20952671 20956396 ECH
Lan12g1216 12 18200791 18204898 Lan1g1082 1 20952671 20956396 LSH
Lan1g1082 1 20952671 20956396 Lan1g0152 1 1126868 1131013 LSH