Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1078 ATGATGAATTCCCCAAAGAAACGCCTGAAATCTGAATTGATCAATAACGATGATGAGGAACAAGTATGTTGCGGCATTTGCTATGCGGAACGTGGAGGAGGTTCAATCGCTGGTGAAATCGATTGCTGTAACCATTTCTTCTGCTTCGTATGCATAATGGAATGGGCCAAACACGAATCTCGATGCCCTATTTGTCGCCAAAGATTCTCGAATGTTCGAAGACCTTCGAAGCTCGGTTTATTTTCTTCTTCTCGTGACGTTAAGGTCCCGCTTCGTGATCAGGTTTATCATCTATATGGAAACATGTCTACTGGTCCTGTTGTTTCTAATGCTCAAGGCGAATGTAGTATCTGTCATGGTGTGACAGATGAAAGTCTTCTACTACTTTGTGATCTTTGCGACACTGCTTCGCATACATACTGTGTTGGCCTCGGCTATACTGTTCCTGAAGGTGATTGGTTTTGTCCTGATTGTGCTATTTCCATTGAGACCAGAGCCAAACAAGAATTGGACCAACAAAATGTTGTGCTAACAGATGAACCAACAGTAGCAGCCTTTGATATTGCCAGAGAATTAAGCAGCCACAGGATTATAAGATCTAGAGAATCTCCTGTGCAACAAAACCTGTCGTCTCCTTTTGTTATTCCTTTACCTGATAGGATTAGAAGATTCAAGGGAAAGAATCCTGTTTCAGGCCCCCAACATGTGCAGCGTAATATACAGGCACTTCGTGAAAATTGGAGTGCTTTGAGAAGTGGCTCATTGAGGTTCCGTTCATTTCAATCTAGTGAATCAGGTAGTCATGAACAAGCTTCCAGTTCCTCATCATGTGGCAAATCAAATAAATCACATTCTACGGCTTCCACTAGTCTTCAAAAATCCACTGTTCAAGGTGGTCCTTCTAGCAGCATGTTGAATGAGAGAGGCTTGCACGATGTTGACATGGCTTGGAAAATGTTAGACAGGGCAAAGACGATGCAGAAGACTCATCAAAGAACAAGCAGCGTGGATCGTCCTTCATGCAGTGGAGTAGCTAGAAAAATATCAAATGCACGTTGTAATTACCTAGAAATGAAAAACCAACGGTCCAGAACATCAGGTTTAACTTGTGCTACAATGGAGAAGCAGGGCGCCCAATCTAGCCTCAACCAGAATTTTGAAAATCATTGGTCTCCAAGGTCGGGAAAGAAAAATCGAAGCGAGGCCATATGTGAGGACATGATACAACATACGAGAGAGCATACTCATGCAGAAAGATACTATGAACCTCCGATGTCTGGAAAGGTACATGCTAGTATCCAAAATGTTCCCCACCATGACAATGCAGAAAGAAATGTTGCTAATGAACAGAGCTCGCCTGCTGGTTTGGCAACCTCAGTAGGTTCAGCTCTCTCTCATGGCAAGTTTGATAGTGCATTCTCCTCTATCAGGAATGAGCATGTTTTCAACGAAGAAAAGTGGTTAGCTAAAAGCTTTGTTGATGGGAACACAAGAAATAGTGAACATGCAAAAACTGAGATCCAGTCTCTTGTTAAGCAAAATCTGAAGCTCTTAACCAGAGATAAACTATTAGATGTTGATACCTTCAAAGCAGTTGCAAGGAAAGCAACCCACACAATCTTAGCTGCTTGCACATCTGAGCTGCAAAATTCTGATGTATACTCCACAAGCTTAGTATGTAGCCACACTGAACAAACTCAACAGTTTCAGAAATCTACCTTAATATCCAATTACTGTCAACAATGCTTTCACCACTTTGTAAACAATGTTGTCAAATCAACCATGTTGGAGAAAGTTGGTGGTCGAGTTTGA 1812 0.4194 MMNSPKKRLKSELINNDDEEQVCCGICYAERGGGSIAGEIDCCNHFFCFVCIMEWAKHESRCPICRQRFSNVRRPSKLGLFSSSRDVKVPLRDQVYHLYGNMSTGPVVSNAQGECSICHGVTDESLLLLCDLCDTASHTYCVGLGYTVPEGDWFCPDCAISIETRAKQELDQQNVVLTDEPTVAAFDIARELSSHRIIRSRESPVQQNLSSPFVIPLPDRIRRFKGKNPVSGPQHVQRNIQALRENWSALRSGSLRFRSFQSSESGSHEQASSSSSCGKSNKSHSTASTSLQKSTVQGGPSSSMLNERGLHDVDMAWKMLDRAKTMQKTHQRTSSVDRPSCSGVARKISNARCNYLEMKNQRSRTSGLTCATMEKQGAQSSLNQNFENHWSPRSGKKNRSEAICEDMIQHTREHTHAERYYEPPMSGKVHASIQNVPHHDNAERNVANEQSSPAGLATSVGSALSHGKFDSAFSSIRNEHVFNEEKWLAKSFVDGNTRNSEHAKTEIQSLVKQNLKLLTRDKLLDVDTFKAVARKATHTILAACTSELQNSDVYSTSLVCSHTEQTQQFQKSTLISNYCQQCFHHFVNNVVKSTMLEKVGGRV* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1078 603 ProSiteProfiles Zinc finger RING-type profile. 24 66 IPR001841 -
Lan1g1078 603 MobiDBLite consensus disorder prediction 373 391 - -
Lan1g1078 603 MobiDBLite consensus disorder prediction 261 304 - -
Lan1g1078 603 MobiDBLite consensus disorder prediction 373 399 - -
Lan1g1078 603 Pfam PHD-finger 115 159 IPR019787 -
Lan1g1078 603 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 83 IPR013083 -
Lan1g1078 603 SUPERFAMILY FYVE/PHD zinc finger 102 164 IPR011011 -
Lan1g1078 603 PANTHER 2X PHD DOMAIN CONTAINING PROTEIN-LIKE 10 599 - -
Lan1g1078 603 PANTHER F18C1.6 PROTEIN 10 599 - -
Lan1g1078 603 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 182 IPR013083 -
Lan1g1078 603 MobiDBLite consensus disorder prediction 261 308 - -
Lan1g1078 603 ProSiteProfiles Zinc finger PHD-type profile. 112 161 IPR019787 -
Lan1g1078 603 Pfam Ring finger domain 24 66 IPR001841 -
Lan1g1078 603 SUPERFAMILY RING/U-box 13 72 - -
Lan1g1078 603 ProSitePatterns Zinc finger RING-type signature. 43 52 IPR017907 -
Lan1g1078 603 SMART ring_2 24 65 IPR001841 -
Lan1g1078 603 SMART ring_2 115 158 IPR001841 -
Lan1g1078 603 SMART PHD_3 114 159 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1078 Lan-Chr1 20931494 20934916 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1078 91 176 C2H2 Transcription Factor Family AT3G01460 28.736 6.99e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan1g1078 PHD 1.9e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1078 - - lang:109353993 1201.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1078 1 20931494 20934916 Lan1g1078 1 20931494 20934916 ECH