Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1077 ATGGAGCTTCCTCATGCGCGCGTCTTTGAAACCCAAGGAAGGAAACCGACGCATGATTTTCTTTCACTGTACAGTAATTCAACTACCCAACAAGATTCAAGGCCACCTTCTCAAGGAAGTCGCCTCAAGACCCAAGATTTCTTGCAGCCACTAGAACGAGCAGATACTAAAGCCAGTGCCAAGGAAGAAGCCACAGATGAAATATCATCGGTTGCTCCTAAGCCACCTCCCCCAACACCAACTTCTGTCGAGCACCTCTTACCTGGAGGAATTGGGACTTACAGTATTAGCCACATTTCCAATTTTAATAATAATCAAAGGGTTCCAAAGCCAGAGGCATCCATTTTCACTGTGCATCAAGCAAATAGTACCGATAGAAATGATGAAAACTCTAACTGCAGTTCATATACTTCAAGTGGTTTCACTTTGTGGGAAGAGTCTGCGGTTAAGAAGGGAAAGACAGGGAAGGAGAATAATGTGGACGTCAAACCCATTCTAGTAGAGTCTGCGGCGAAGCCAGGGCAGTGGACGTCGAGTGAGCGAACGTCACAGTCGTTTTCTAACAATCGACACAACAGCTTCAACTCTTGCTCCACCTCTCAGACTACTGGGCAGAAGAACCAGAGCTTTATAGAAATGATGAAGTCTGCAGAGGCTGGTGCCCAGGATGAAGAACTAGAAAACGAAGAAACATTTTTTCTCAAGAAAGAATTCCAAAGAGCAGAACTGAAAGTGAAAGTGGATGGGAAGAGTACTGAACAAAAGCCAAACACACCAAGATCAAAACATTCTGCAACAGAGCAGCGGAGAAGGAGCAAAATAAATGACAGATTCCAGATGCTACGAGAGCTTATTCCACACAGTGATCAAAAGAGGGACAAAGCATCTTTTTTGTTAGAGGTCATTGAGTACATTCACTTTTTACAAGATAAGGTGCATAAGCATGAAGGTTCATTCCAAGAGTGGAATCACGAGTCAGAAAAATTGGTGCCATGGAGAAATAATGCCAGGCAAGCAGAAAGTTTTGAAACACGCGCGAAAAATAGTGGGCTAGGTCCATCTCCAACATCCCTGTTTGCTTCAAAGACTGACCTGAAAAATATCACCATCTCCCAGACAATTCCTGGAAGTACTCAGCATGTAGAATCTGGATTGAACATATCAACTAACTTCAAGAGAATGGATCATCATCCTGGAATAACAAACAACGCTTTTCCAATTCCTATTTCCCCACAGCCTAATTTTTTCATTCCTGCCCAAAGTGGTGGTCGTGGTGGGGTGGTGTCTCAGCTCGCACATGGATTGACATCTGATGCAGAGAATGGGATATATCAACATTCAGAAGAGTATCAGACTATGGCAACTACAAGTGAAAAATTGAAAGAGAAAGAGCCCACTATTGAAGGCAGTGCCATTAGCAAATCACATGCGTACTCAAAAGGATTGTTGGACACACTTACACATGCGCTTCATAGTTCAGGAGTGGATTTGTCACAAACCAGTATCTCAGTGCAAATTGAACTTGGTAAGCAAACAAACATCAGACCAATTGTGCCAATGTCAATGTGTGGTGCTAAGGGTGAAGAAGTTCCTTCTAACAGTGAAAGGATGATGCGGTCTAGAGTTGCTAGCTCTGAGAAGTCTGATCAACCAGTGAAGAAGCTAAAGACGTGCAGAACCTAA 1683 0.4337 MELPHARVFETQGRKPTHDFLSLYSNSTTQQDSRPPSQGSRLKTQDFLQPLERADTKASAKEEATDEISSVAPKPPPPTPTSVEHLLPGGIGTYSISHISNFNNNQRVPKPEASIFTVHQANSTDRNDENSNCSSYTSSGFTLWEESAVKKGKTGKENNVDVKPILVESAAKPGQWTSSERTSQSFSNNRHNSFNSCSTSQTTGQKNQSFIEMMKSAEAGAQDEELENEETFFLKKEFQRAELKVKVDGKSTEQKPNTPRSKHSATEQRRRSKINDRFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQDKVHKHEGSFQEWNHESEKLVPWRNNARQAESFETRAKNSGLGPSPTSLFASKTDLKNITISQTIPGSTQHVESGLNISTNFKRMDHHPGITNNAFPIPISPQPNFFIPAQSGGRGGVVSQLAHGLTSDAENGIYQHSEEYQTMATTSEKLKEKEPTIEGSAISKSHAYSKGLLDTLTHALHSSGVDLSQTSISVQIELGKQTNIRPIVPMSMCGAKGEEVPSNSERMMRSRVASSEKSDQPVKKLKTCRT* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1077 560 MobiDBLite consensus disorder prediction 18 45 - -
Lan1g1077 560 Pfam Helix-loop-helix DNA-binding domain 260 309 IPR011598 GO:0046983
Lan1g1077 560 SMART finulus 264 314 IPR011598 GO:0046983
Lan1g1077 560 PANTHER TRANSCRIPTION FACTOR BIM1 1 557 - -
Lan1g1077 560 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 557 IPR044295 GO:0003700|GO:0006351|GO:0046983
Lan1g1077 560 MobiDBLite consensus disorder prediction 246 274 - -
Lan1g1077 560 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 258 308 IPR011598 GO:0046983
Lan1g1077 560 MobiDBLite consensus disorder prediction 526 560 - -
Lan1g1077 560 MobiDBLite consensus disorder prediction 1 82 - -
Lan1g1077 560 MobiDBLite consensus disorder prediction 172 206 - -
Lan1g1077 560 CDD bHLH_AtBIM_like 257 333 - -
Lan1g1077 560 MobiDBLite consensus disorder prediction 532 560 - -
Lan1g1077 560 Gene3D - 256 330 IPR036638 GO:0046983
Lan1g1077 560 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 256 329 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1077 Lan-Chr1 20915302 20925526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1077 1 512 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 44.404 3.48e-108 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan1g1077 HLH 4.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1077 - - adu:107468970 780.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1077 1 20915302 20925526 Lan1g1077 1 20915302 20925526 ECH
Lan12g1218 12 18218168 18225534 Lan1g1077 1 20915302 20925526 LSH
Lan1g1077 1 20915302 20925526 Lan1g0149 1 1107743 1112227 LSH