Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1073 ATGTCTGGTGAAGAAGGTGTTGTTGTACCTGAGCCAGTTGCAGCTGTGTCGATTCCTGGCGAGCCAATGGACATATTGACTGCCTTACAGCTTGTGCTCCGAAAATCACTCGCTTATGGTGGCCTTGCTCGAGGGCTTCATGAAGCTGCTAAAGTGATTGAGAAGCATGCTGCACAACTCTGTGTTCTAGCAGAAGATTGTGACCAGCCCGACTATGTTAAACTCGTCAAAGCCCTTTGTGCAGAGCACAATGTTAGCCTGCTCACAGTTCCAAGTGCAAAGACCCTCGGAGAGTGGGCTGGTTTGTGCAAGATTGATTCAGAAGGAAAAGCTAGGAAGGTAACTGGTTGCTCCGTCGTGGTTGTCAAGGATTTTGGGGAGGAACATGAAGCCTATAATGTTGTTCTGCAGCATGTCAAGTCTAACTGA 429 0.4825 MSGEEGVVVPEPVAAVSIPGEPMDILTALQLVLRKSLAYGGLARGLHEAAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSVVVVKDFGEEHEAYNVVLQHVKSN* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1073 142 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 28 121 IPR004038 -
Lan1g1073 142 ProSitePatterns Ribosomal protein S12e signature. 28 46 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lan1g1073 142 Gene3D - 11 142 IPR029064 -
Lan1g1073 142 PRINTS Ribosomal protein S12E family signature 32 45 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lan1g1073 142 PRINTS Ribosomal protein S12E family signature 46 62 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lan1g1073 142 PRINTS Ribosomal protein S12E family signature 87 108 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lan1g1073 142 PRINTS Ribosomal protein S12E family signature 112 125 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lan1g1073 142 PANTHER 40S RIBOSOMAL PROTEIN S12 1 142 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lan1g1073 142 SUPERFAMILY L30e-like 22 140 IPR029064 -
Lan1g1073 142 PANTHER 40S RIBOSOMAL PROTEIN S12 1 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1073 Lan-Chr1 20881567 20883252 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1073 18 142 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 74.400 1.13e-65 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1073 K02951 - gmx:100499723 251.521