Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1070 ATGGAACCTTGGAGCTATGTTTCTGAAGAAAAGGGGTATGGCTCAAATGACACACTCTCCCTTCCTAATAAAAATTCAATCTTGGGATGGGAACTGAAAACCCCATGTACTTTTTCCAATGAAATGTTAGCAATGGGTTATCAAAACATTGAGAATCAATGTTTTCAGGATTTGGGGTATCCTGAAATGTTGGAGAAACACTTGTCTGGTGAAAATGATGGCAGAATCACTAGTACTACTGTTATGGCTGCTACCCCAAATCCATTTTATGCAAGAGGGGATTCCAATATCAGGGTTTCAAACTCTGTGCTAGACTCTAATGGTAGTGATTCACTCATTGATTTGAAGTTGGGAAGATTGGCTGATAATGGAGATGCAATTGATCTAGCATTTTGCAAAGGAGCACCTATGTTGTCTTCATCCGAGTCATCGACACCTGCAAAGCGAGTAAGAGCTTCGAGGTTGCGCTCGCAGACTGCGTACTGCCAAGTCTATGGCTGTAACAAGGATCTCAGTTCTTGTAAGGATTATCACAAGAGGCATAGAGTTTGTGAGGTTCACTCCAAGACTGCCACAGTTACAGTGAATGGCATTGAGCAAAGGTTTTGTCAGCAATGTAGTAGGTTTCATTTGCTAGCTGAATTTGATGATGGTAAGCGCAGCTGTCGTAAACGCCTAGCAGGCCATAACGAGCGTCGGAGAAAACCACAAATGGGTATTCACTCTGTAAAGGCGGGGAGGTTGCTCCAGCCATGTGGTGATAGCAGATTCCAGGGGACCATGCTGACATCAGCATCTTATATCTGCCCCGAGATTCTCCCGAGTAGGATCATGCCTTCTGAGAAATATGGAATGAATGGCTTCTGGAGACCTAATAAATCAGAAGAATGGACAGGTTTTAAGCATCTTTCTTCTATGCCTATCTCCAATGGATATTCTCAGTCAAGATCCCTATTTCCTTCATATAACCAAAAACAGTTCCCTTTTCTTCATGAAAATGGTGCTACATCCACTACAGGGAGCATCTTCTCTGACCATAATATCCAATATCCACCACCTCTCCTTGGGGCTCAAAATTCTGCGTCAAGATCACTATTCCAGAACACCACCTCCTTAGGAAGTGAGGACTTCAATATTTTTGAAACAACAACAACTGTTCAAGGACTACCGGGAATTTCAGACTCTTGTGCTCTCTCTCTTCTGTCATCTCTATCCCAGAACTCTTCACGCCAATCATCCGGAGTTCAATTGGCTCACCACTTTGTTATTCCCAGCAGCCATAGCCATTACTACAACATGAGTCGGGTCTCCGAGAAGATGGGAAATAGCTCACACACATCATCAAATCGAGTATCAGATAGGTTTCCATCAGAAATGAATCCCGCAGACGGAAATCATCTTAATCCTGTTTTGATACCAGACAATGATGATGATATTGTCAACTTCGGAATGGCAGATGGGATTTTCCAAGGTTCAGATTTTATGAATGTAAAAGACTGTCTTCCTTGTGAAGATGGTGCTACAATTGACTTGCTACAACTGTCATCACAACTTCAGCGAGTCGAGCATCAGAGGCAACCCTTGCAGGTGAAGCAAGAAAATGACTCTTTTTGCACTCTCCGGATTACTTAA 1632 0.4289 MEPWSYVSEEKGYGSNDTLSLPNKNSILGWELKTPCTFSNEMLAMGYQNIENQCFQDLGYPEMLEKHLSGENDGRITSTTVMAATPNPFYARGDSNIRVSNSVLDSNGSDSLIDLKLGRLADNGDAIDLAFCKGAPMLSSSESSTPAKRVRASRLRSQTAYCQVYGCNKDLSSCKDYHKRHRVCEVHSKTATVTVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQMGIHSVKAGRLLQPCGDSRFQGTMLTSASYICPEILPSRIMPSEKYGMNGFWRPNKSEEWTGFKHLSSMPISNGYSQSRSLFPSYNQKQFPFLHENGATSTTGSIFSDHNIQYPPPLLGAQNSASRSLFQNTTSLGSEDFNIFETTTTVQGLPGISDSCALSLLSSLSQNSSRQSSGVQLAHHFVIPSSHSHYYNMSRVSEKMGNSSHTSSNRVSDRFPSEMNPADGNHLNPVLIPDNDDDIVNFGMADGIFQGSDFMNVKDCLPCEDGATIDLLQLSSQLQRVEHQRQPLQVKQENDSFCTLRIT* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1070 543 Gene3D - 153 223 IPR036893 GO:0003677|GO:0005634
Lan1g1070 543 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 72 543 IPR044817 GO:0003677
Lan1g1070 543 ProSiteProfiles Zinc finger SBP-type profile. 159 236 IPR004333 GO:0003677
Lan1g1070 543 SUPERFAMILY SBT domain 160 240 IPR036893 GO:0003677|GO:0005634
Lan1g1070 543 Pfam SBP domain 162 235 IPR004333 GO:0003677
Lan1g1070 543 PANTHER 1 PROTEIN, PUTATIVE-RELATED 72 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1070 Lan-Chr1 20861299 20865019 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1070 113 278 SBP-box Gene Family AT1G69170 54.217 1.54e-50 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lan1g1070 SBP 6.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1070 - - gmx:100817547 732.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1070 1 20861299 20865019 Lan1g1070 1 20861299 20865019 ECH
Lan1g1070 1 20861299 20865019 Lan1g0137 1 1007990 1011923 LSH