Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1065 ATGGTGATTGAAAATTCAAGTGAAGGTTATCAAGCAAAGAAAGAGGGTAATACTAGTAATATTGAGAAGCTGTCAATGGCACCATCAACTTCTTCAAGACAATGGTCAGCATTCAGAAATCCAAGAATAGTGAGAGTATCAAGTGCTTTGGGAGGAAAAGATAGGCATAGCAAAGTTTGCACTGTTAGGGGACTAAGGGACAGAAGGATTAGGCTTTCTGTGCCAACAGCAATTCAGTTATATGATCTTCAAAACAAACTTGGTCTCAACCAACCTAGCAAAGTTATAGATTGGTTGATTGAAGCCACAAAACTTGATATTGATAAGCTCCCTCCACTTCAAATCCCTCATGGTTTCCCTCAATTTCATCACCAACAAACCCTATTGCCCAGTGCTTCTCATCATCATCAGTTTTCTCTTGGAGGATTCTATGATGCTAATCTTTCCACATCCATAAGAGATAATGGTGGAAATAATCAAACTCTCTTGGCAAAGTCAAGGTATAATTGGGATTTTGATTTAGAAAATTCAAGACTAAAAGGTAAGGAAGGTGAAAGTGTAATGTCCAATATCTCTCAAAAAGGGAAGTGGATCAAAACTGGTTGTGAACAAGAAAATCAAGATGGGATTGATGGTTATAATAGACAGGATTCAACTCAGAGGCTTTTCCATGGTTTGTTAAACAATGCAATGGCTTATAACTCTTCCTACCATTCTGAGCCTTCAACTTTATCTTTATCCCAATTTGGAAGCCATGGATCTTTATTTCCTTCCCATGTAGATCCTCATCAAAACAGTGGCAATGGTGTCCAATTTTCATCTTATAATTTGGCTGTACCATCTACTTCTCAATTACTTTTTTCTCCATCTTCTGCTACACCATCACTTTTCACTCCCTATGCTCCATTTATGGCCAACTCATCAGTGGAAAATGATCCAAGACAAGTCAACCATGTTCAGATCTTGAGCTCATCAAGTAATAATTCACAAGTCATGCAACCTCATCATCCTCTCATTCAGTCTTTTCATCCACTCAATTCACCACTCAGACGCCTTCCAATACCATTTAATTCCAAGCTTCTTGACTCAGATAGCAACAACAATCGTAGCCAACCAAATAAGGGAAGTGGTTCTCCTTCTTGA 1143 0.3841 MVIENSSEGYQAKKEGNTSNIEKLSMAPSTSSRQWSAFRNPRIVRVSSALGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQNKLGLNQPSKVIDWLIEATKLDIDKLPPLQIPHGFPQFHHQQTLLPSASHHHQFSLGGFYDANLSTSIRDNGGNNQTLLAKSRYNWDFDLENSRLKGKEGESVMSNISQKGKWIKTGCEQENQDGIDGYNRQDSTQRLFHGLLNNAMAYNSSYHSEPSTLSLSQFGSHGSLFPSHVDPHQNSGNGVQFSSYNLAVPSTSQLLFSPSSATPSLFTPYAPFMANSSVENDPRQVNHVQILSSSSNNSQVMQPHHPLIQSFHPLNSPLRRLPIPFNSKLLDSDSNNNRSQPNKGSGSPS* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1065 380 ProSiteProfiles TCP domain profile. 52 110 IPR017887 -
Lan1g1065 380 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 3 374 IPR005333 GO:0003700
Lan1g1065 380 Pfam TCP family transcription factor 52 162 IPR017887 -
Lan1g1065 380 MobiDBLite consensus disorder prediction 356 380 - -
Lan1g1065 380 MobiDBLite consensus disorder prediction 359 380 - -
Lan1g1065 380 PANTHER TCP FAMILY TRANSCRIPTION FACTOR 3 374 - -
Lan1g1065 380 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1065 Lan-Chr1 20820661 20822751 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1065 36 347 TCP Transcription Factor Family AT5G60970 42.378 1.02e-55 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lan1g1065 TCP 8.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1065 - - lang:109361996 503.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1226 12 18287244 18289244 Lan1g1065 1 20820661 20822751 LSH
Lan1g1065 1 20820661 20822751 Lan1g0131 1 964756 967015 LSH