Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1063 ATGGCTCAATCAATTACCCCAAATGCTATTTCAGCTTTACTTGCTAACCCTTCTCCAGATTCTTCTTCAGATCTACCACATATCGTTGTCCAAGTCCTCGATCTCAAACCTAGCGGCAACAGATTCATGTTCAATGCTAGTGATGGAAAATTGAAGCTGAGGGCGATTCTTCCTTTCAATCAAAGCCCTGAGGTACACTCTGGGAATATTCAGAATCTGGGTCTTATTCGAATCGTCGATTACACTCTCAACGATATCCCTAACAAATCTGAGAAATATCTTATTGTAACGAAATGTGAACCTGTTTCACCTGCGCTTGAAGCGGAGATAAAGAGTGAGGTTAACACTGTAAGCGATTCTTCTTCTGTTGGCATTGTTTTGAAGCCAAAGCAGGAAGTGACGGCAAAATCTGCGGCTCAGATTGTGCAAGAACAACATCATAATGTGACTCGTACTGAACGGAAGGCGGTGTCACGGAGGGTGAATCCTCTTGTATCATTGAATCCATACCAAGGTAATTGGACAATCAAGGTTAGTGTTACAAGCAAAGGGAACATGCGTACTTATAAGAATGCTAGAGGAGAAGGTTGTGTCTTCAATGTGGAGTTGACTGATGAAGATGGCACTCAGATTCAAGCAACCATGTTTAATGAGGCTGCAAAGAAATTTTATGACAAGTTTGTTTTGGGAAAAGTTTATTACATTTCAAAGGGATCTTTAAAAGTTGCTAATAAACAGTTTAAAACTGTTCAAAATGATTATGAAATGACACTGAATGATTATTCTGAGGTAGAAGAGGTGGCCGATGAAGCAGCTTTTGTCCCTGCAACAAAATTTAACTTCGTTCAAATTGATCAGTTGGGTCCTCATGTCAACAAGAATGACCTTGTTGATGTAGTTGGAGTTGTTCAGAATGTGTCTTCAACCATGAGCATTAGGAGGAAGAGCAACAATGAGACAGTTCCAAAGCGCGACATTACAATTGCTGATGATACTAAGAAGACAGTAGTTGTATCATTGTGGAATGAGCTTGCAACTACCATAGGGCAAGAGTTGCTTGAAATTGCTGATCAATCTCCAGTAGTTGCTATCAAGTCCCTCAAGGTTGGGGATTTCCAAGGTGTTTCTCTGTCAGCTATAAACAAAAGTGTGGTTCTAATAAATCCAGACTTACCTGAAGCAAATAAACTCAGATGCTGGTATGATTCTGAAGGCAAGGAAGCTGCAATGGCCTCTGTGGGTGCTGGGTCAAGTCCAGCAAGCAAGAATGGAAACAGATCAGTGTACTCTGATCGTGTTTCACTTTCTCACATAACTTCAAACCCATCCTTGGGGGAAGACAAGCCTGCATTCTTCAGTATTAGAGGATATATAAGCTTTATCAAGCCTGAGCAGGCAATGTGGTACCGTGCATGTAAAACTTGCAACAAGAAAGTTACTGAAAGCATTGGTGCTGGGTATTGGTGTGAAGGTTGCCAGAAAAATGATGACCAGTGCAATTTAAGGTATATTATGGTTGTAAAAGTTTCTGATGCAAGTGGGGAGTCTTTTATCTCAGTCTTCAATGAAGAAGCTGAGAAGATTGTTGGATGTTCTGCTGATGAGCTTGACAACCTTAAATCACAGGATGGGGAAGATAGTCCTTATCAAATGAAATTGAAACAAGCTACTTGGGTTCCACATCTTTTCAGGGTTAGTGTTACTCAGAATGAGTATAATAATGAGAAGAGGCAAAGAATTACAGCTCGTGCAATTGTTCCTGTTGACTTTGCTACTGAGTCAAAGCTTCTGCTTGAAGATATTTCAAAGATGGGAGTTTCTCAATAA 1827 0.4039 MAQSITPNAISALLANPSPDSSSDLPHIVVQVLDLKPSGNRFMFNASDGKLKLRAILPFNQSPEVHSGNIQNLGLIRIVDYTLNDIPNKSEKYLIVTKCEPVSPALEAEIKSEVNTVSDSSSVGIVLKPKQEVTAKSAAQIVQEQHHNVTRTERKAVSRRVNPLVSLNPYQGNWTIKVSVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAAKKFYDKFVLGKVYYISKGSLKVANKQFKTVQNDYEMTLNDYSEVEEVADEAAFVPATKFNFVQIDQLGPHVNKNDLVDVVGVVQNVSSTMSIRRKSNNETVPKRDITIADDTKKTVVVSLWNELATTIGQELLEIADQSPVVAIKSLKVGDFQGVSLSAINKSVVLINPDLPEANKLRCWYDSEGKEAAMASVGAGSSPASKNGNRSVYSDRVSLSHITSNPSLGEDKPAFFSIRGYISFIKPEQAMWYRACKTCNKKVTESIGAGYWCEGCQKNDDQCNLRYIMVVKVSDASGESFISVFNEEAEKIVGCSADELDNLKSQDGEDSPYQMKLKQATWVPHLFRVSVTQNEYNNEKRQRITARAIVPVDFATESKLLLEDISKMGVSQ* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1063 608 SUPERFAMILY Nucleic acid-binding proteins 163 271 IPR012340 -
Lan1g1063 608 SUPERFAMILY Nucleic acid-binding proteins 279 406 IPR012340 -
Lan1g1063 608 Gene3D - 160 270 IPR012340 -
Lan1g1063 608 Gene3D - 415 604 IPR012340 -
Lan1g1063 608 SUPERFAMILY Nucleic acid-binding proteins 1 106 IPR012340 -
Lan1g1063 608 PANTHER REPLICATION FACTOR A 1, RFA1 5 602 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lan1g1063 608 Gene3D - 4 117 IPR012340 -
Lan1g1063 608 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 5 602 - -
Lan1g1063 608 CDD RPA1_DBD_B 307 402 - -
Lan1g1063 608 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 4 603 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lan1g1063 608 Pfam OB-fold nucleic acid binding domain 174 262 IPR004365 GO:0003676
Lan1g1063 608 Pfam Replication factor-A C terminal domain 451 597 IPR013955 -
Lan1g1063 608 Gene3D - 274 414 IPR012340 -
Lan1g1063 608 CDD RPA1_DBD_C 435 603 IPR013955 -
Lan1g1063 608 SUPERFAMILY Nucleic acid-binding proteins 430 604 IPR012340 -
Lan1g1063 608 Pfam Replication factor-A protein 1, N-terminal domain 5 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lan1g1063 608 CDD RPA1_DBD_A 163 266 - -
Lan1g1063 608 Pfam Replication protein A OB domain 290 388 IPR031657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1063 Lan-Chr1 20806516 20809722 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1063 1 608 Core DNA Replication Machinery Family AT5G08020 67.323 0.0 887
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1063 K07466 - qsu:112017680 927.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1063 1 20806516 20809722 Lan1g1063 1 20806516 20809722 ECH
Lan1g1063 1 20806516 20809722 Lan1g0128 1 943344 946518 LSH