Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1060 ATGCAGCAAGTAAAGCTTCATAAACAAAACCTGAACCCAAACCTAAGCCTATCAATGGCCTCTGCGAAACGGTGCCATTACGAGGTCCTCGGCGTCTCCCTTGACTCCACCGCCGACGAAATCCGATCAGCTTACCGCCGCCTCGCCCTTCAGCGCCACCCTGACAAGCTCGTCCAATCCGGCATCTCCCAATCCGAAGCCACCGCTCAGTTTCAAGAGCTTCAACATGCTTACGAGGTTCTATCCGATCCTAAGGAACGAACTTGGTACGACTCTCACCGTTCTCAGATCCTATTCTCCGATCCTAACTCCGTTGGTAGCTCCGTCGTCCCTGACCTATTCTCATTTTTCTCCAACACGGTATTTAACGGTTACTCCGATTCCGGCAAGGGTTTCTATAAAGTGTATTCCGATGTGTTTGATAAAATTCACGCTAATGAGATCAATTTCGCCAAGAAGATGGGGATCGGTGTTGATTCGGTTCGACAAGCTCCGGTTATGGGGAATTTGGAGAGTCCTTACGCTCAGGTTACAGCGTTTTATAGTTACTGGCTTGGTTTTGTGACGATTATGGATTTCTGTTGGGCTGATGAGTATGATGCTATGGCTGGTCCGAACCGGAAGTCGAGGAGGCTTATGGAGGAGGAGAATAATAAGGCGAGGAGGAAGGCGCGGAAGGAGTATAATGATACTGTGAGGAAGTTGGCTGATTTCACGAAAAAGAGGGATAAGAGGGTGATTGATATGAAGGTGAAGAAGAATGCTGAGTTGGAGAAGAAAAAGGAGGACGAGATGGTGATGAAGAGGAAGTTAGAAAAGGAGAGGAAGGAGAGGGCTATGAAGTACGAGGAGCCGGAGTGGGCGAAGGTGGAGGAGGATAATGAGGATGATTGGGTTGAGGATTTGGAGGAGGAGACGAAGGCCGAGAAGGAGTTTTATTGTGTGTTGTGTGGGAAGAAGTTTAAGAGTGAGAAACAGTGGAAAAATCATGAGCAGTCTAAGAAGCATAAGGAGAAGGTTGCTGAGTTCAGGGATTCGCTTGATGATGACGAAGAGGAGCAAGTTGAAGAGGATTTAGAAGTGGAAATTGAAGGAGAAGGATTGCATAGTGAGGGGTATGGAGTTGAAGTGAATGATGATCGGTTGGTGGAGGATGATTATGGGGTTGATGATTTGGAGGGGAGAGTTAGAGATGGTCTCAATGTTACCGAGGAGGAGTCTAGAAATGGAGTTGAGCTTGACAACGATGATGGTGGTGAATTTTTTGATGCAAAGGAAGGTCACGCAGCTGGTGTGTCGGTAGATTTTGGTGAAGATGATGAAATTGGTGTTCTTGAAGCAATGGTGGCTGGACACAAGAGCAGAAAACCCAATGCTTCAACGCAGAAGCCCAAGGATTGGGCAGACACAACCCACATTGAGAATGTGAATGATGGGGATGGCCCTATGGAATATGACAATCGGAAGAGTGCAAGAAAGAAACGACGAAACAAGAAAGAGAAGGGTAAGGAAAACTGGGAAGAATCCCATGTGGCTGCTGCCAATGCGGATCTTGAGAATTTGGACAGTAAGGGAAACAATGATTCTTATACTGAAGAGTCTTGTTCCTCCCAACATTTTGTGGGAAATGATACTAATGGTAAAGAGAATGAGCCTATAGGTAGAGATAAGAAGGCTTCAAGCCAAGTAGCTGATAAGAAAGGAACCGCAAAGGACACAAAAACCAAAGCAAAAACTTCATCCAAAGAAAGAAAAGGAAAGGCAACTTCGAAGAATGTCGGCAATAGCTGTGACGCTTGTGGAGAGGAGTTTGAGTCGAGGAATAAATTGCATATGCATCTTGGCGAGACTGGGCATGGCACAATAAAAAGGCGATAA 1878 0.4617 MQQVKLHKQNLNPNLSLSMASAKRCHYEVLGVSLDSTADEIRSAYRRLALQRHPDKLVQSGISQSEATAQFQELQHAYEVLSDPKERTWYDSHRSQILFSDPNSVGSSVVPDLFSFFSNTVFNGYSDSGKGFYKVYSDVFDKIHANEINFAKKMGIGVDSVRQAPVMGNLESPYAQVTAFYSYWLGFVTIMDFCWADEYDAMAGPNRKSRRLMEEENNKARRKARKEYNDTVRKLADFTKKRDKRVIDMKVKKNAELEKKKEDEMVMKRKLEKERKERAMKYEEPEWAKVEEDNEDDWVEDLEEETKAEKEFYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFRDSLDDDEEEQVEEDLEVEIEGEGLHSEGYGVEVNDDRLVEDDYGVDDLEGRVRDGLNVTEEESRNGVELDNDDGGEFFDAKEGHAAGVSVDFGEDDEIGVLEAMVAGHKSRKPNASTQKPKDWADTTHIENVNDGDGPMEYDNRKSARKKRRNKKEKGKENWEESHVAAANADLENLDSKGNNDSYTEESCSSQHFVGNDTNGKENEPIGRDKKASSQVADKKGTAKDTKTKAKTSSKERKGKATSKNVGNSCDACGEEFESRNKLHMHLGETGHGTIKRR* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1060 625 ProSitePatterns Zinc finger C2H2 type domain signature. 314 336 IPR013087 -
Lan1g1060 625 Coils Coil 210 230 - -
Lan1g1060 625 Gene3D DnaJ domain 14 104 IPR036869 -
Lan1g1060 625 PRINTS DnaJ domain signature 27 45 IPR001623 -
Lan1g1060 625 PRINTS DnaJ domain signature 45 60 IPR001623 -
Lan1g1060 625 PRINTS DnaJ domain signature 66 86 IPR001623 -
Lan1g1060 625 CDD DnaJ 25 83 IPR001623 -
Lan1g1060 625 Pfam DnaJ domain 26 91 IPR001623 -
Lan1g1060 625 Pfam Zinc-finger double-stranded RNA-binding 312 337 IPR022755 -
Lan1g1060 625 ProSiteProfiles dnaJ domain profile. 25 94 IPR001623 -
Lan1g1060 625 MobiDBLite consensus disorder prediction 447 600 - -
Lan1g1060 625 MobiDBLite consensus disorder prediction 606 625 - -
Lan1g1060 625 MobiDBLite consensus disorder prediction 365 380 - -
Lan1g1060 625 ProSitePatterns Zinc finger C2H2 type domain signature. 597 619 IPR013087 -
Lan1g1060 625 SMART ZnF_U1_5 309 343 IPR003604 GO:0003676|GO:0008270
Lan1g1060 625 MobiDBLite consensus disorder prediction 549 589 - -
Lan1g1060 625 MobiDBLite consensus disorder prediction 394 424 - -
Lan1g1060 625 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 19 625 IPR044648 -
Lan1g1060 625 MobiDBLite consensus disorder prediction 327 344 - -
Lan1g1060 625 ProSitePatterns Nt-dnaJ domain signature. 71 90 IPR018253 -
Lan1g1060 625 MobiDBLite consensus disorder prediction 520 545 - -
Lan1g1060 625 Gene3D Classic Zinc Finger 300 360 - -
Lan1g1060 625 ProSiteProfiles Zinc finger C2H2 type domain profile. 312 341 IPR013087 -
Lan1g1060 625 SMART c2h2final6 312 336 IPR013087 -
Lan1g1060 625 SMART c2h2final6 595 619 IPR013087 -
Lan1g1060 625 MobiDBLite consensus disorder prediction 394 426 - -
Lan1g1060 625 Coils Coil 333 353 - -
Lan1g1060 625 MobiDBLite consensus disorder prediction 327 380 - -
Lan1g1060 625 SUPERFAMILY beta-beta-alpha zinc fingers 301 353 IPR036236 -
Lan1g1060 625 Coils Coil 254 277 - -
Lan1g1060 625 SMART dnaj_3 24 86 IPR001623 -
Lan1g1060 625 MobiDBLite consensus disorder prediction 345 364 - -
Lan1g1060 625 SUPERFAMILY Chaperone J-domain 21 118 IPR036869 -
Lan1g1060 625 MobiDBLite consensus disorder prediction 459 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1060 Lan-Chr1 20795878 20798809 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1060 15 625 C2H2 Transcription Factor Family AT1G74250 50.152 1.28e-179 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan1g1060 DnaJ 2.5e-21 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1060 K09506 - gmx:100788305 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1060 1 20795878 20798809 Lan1g0123 1 917898 920488 LSH