Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan1g1048 | ATGTCTGACGAAGAACATCATTTTGAGTCTAAGGGAGATGCCGGAGCCTCCAAAACCTATCCTCAACAAGCTGGTACTATTCGTAAGAACGGTTACATAGTTATCAAGGGTCGTCCATGCAAGGTTGTTGAAGTTTCAACTTCCAAGACTGGTAAGCATGGTCATGCTAAGTGTCATTTTGTTGGAATTGATATTTTCACTGCTAAGAAGCTTGAGGATATTGTTCCATCTTCCCACAATTGTGATGTTCCTCATGTCAATCGTACTGATTACCAGCTCATTGATATTGCTGAGGATGGATTTTTGAGTTTGCTTACTGAAAATGGTAGCACCAAGGATGACCTCAAGCTTCCCACTGATGAAGCTCTGCTTGCTCAGATAAAGGATGGATTTGCTGAGGGGAAAGACCTTGTTGTTTCTGTTATGTCTGCTATGGGTGAGGAACAGATCAATGCTCTGAAGGATATTGGTCCAAAGAACTAG | 483 | 0.4203 | MSDEEHHFESKGDAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDIAEDGFLSLLTENGSTKDDLKLPTDEALLAQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPKN* | 161 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan1g1048 | 160 | PANTHER | TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER | 1 | 156 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
| Lan1g1048 | 160 | SUPERFAMILY | Nucleic acid-binding proteins | 86 | 156 | IPR012340 | - | |
| Lan1g1048 | 160 | Pfam | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 85 | 154 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
| Lan1g1048 | 160 | ProSitePatterns | Eukaryotic initiation factor 5A hypusine signature. | 50 | 57 | IPR019769 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
| Lan1g1048 | 160 | CDD | S1_eIF5A | 86 | 156 | - | - | |
| Lan1g1048 | 160 | PIRSF | Transl_init_eIF5A | 1 | 157 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
| Lan1g1048 | 160 | Gene3D | - | 1 | 85 | IPR014722 | - | |
| Lan1g1048 | 160 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Lan1g1048 | 160 | SUPERFAMILY | Translation proteins SH3-like domain | 15 | 93 | IPR008991 | - | |
| Lan1g1048 | 160 | TIGRFAM | eIF_5A: translation elongation factor IF5A | 17 | 153 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
| Lan1g1048 | 160 | SMART | eIF_5a_2 | 85 | 154 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
| Lan1g1048 | 160 | PANTHER | BNAA07G09420D PROTEIN | 1 | 156 | - | - | |
| Lan1g1048 | 160 | Gene3D | - | 86 | 159 | IPR012340 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan1g1048 | Lan-Chr1 | 20726417 | 20727773 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan1g1048 | 1 | 159 | Eukaryotic Initiation Factors Gene Family | AT1G13950 | 89.937 | 3.00e-105 | 296 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan1g1048 | K03263 | K02180 | gmx:100803862 | 316.62 |
Event-related genes