Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1043 ATGGAAAGTGGAGGAATTGAAGGAGCAGGGGTGCTTCGTTTTGTGTCCAAATTGATATTATGTGCTATTTCTGCAGCTCTCACTGGTTGTTTTGCTATTGCTGGAGCCCTTGCAGGAGCTCTACTTGGTGCTTTAGCAGCCAAGGCTTCGAAGAGTAGTTTTCTCCGTGGAACTTCATTGGGCGCCATTGCTGGGGCTATCATCTCAATGGAAGTGTTGGAAGCCTCCCGCGACTTCTTGTTTATGGACCGAACTAGCTCTCAGGGTGCATCATATATGGCACATTTCATAGATGAACTTGTTCGTGGAAGGCTTGTAGAGGAATCACTTACACCTGTTATTTTACCTGCTTACAATTTGCAGTTTGATCAGGCTCGTGTTGCTAATACCGGATTCGATGAGATTTACGATTTCCAATATCACAGCTTAGTAGTATCCAGAGGATTGTCAGGGGAATCATTGAACAAGTTACCTCACCATGTAGTACTAAATGCAGAGAATACATGCTGTACAATATGTTTGCAGGATATTGAAGTTGGAGAAACTGCAAGAAGATTACCTCGATGTCACCATACATTCCATTTGAAATGTGTGGACAAATGGCTTGTCAAGAATGATTCATGTCCTGTCTGCAGACAAGGTGTGTAG 648 0.4336 MESGGIEGAGVLRFVSKLILCAISAALTGCFAIAGALAGALLGALAAKASKSSFLRGTSLGAIAGAIISMEVLEASRDFLFMDRTSSQGASYMAHFIDELVRGRLVEESLTPVILPAYNLQFDQARVANTGFDEIYDFQYHSLVVSRGLSGESLNKLPHHVVLNAENTCCTICLQDIEVGETARRLPRCHHTFHLKCVDKWLVKNDSCPVCRQGV* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1043 215 SMART ring_2 170 211 IPR001841 -
Lan1g1043 215 ProSiteProfiles Zinc finger RING-type profile. 170 212 IPR001841 -
Lan1g1043 215 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 8 214 IPR044523 -
Lan1g1043 215 SUPERFAMILY RING/U-box 162 214 - -
Lan1g1043 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 215 IPR013083 -
Lan1g1043 215 Pfam Ring finger domain 170 212 IPR001841 -
Lan1g1043 215 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 8 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1043 Lan-Chr1 20697946 20700264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1043 15 215 C3H Transcription Factor Family AT1G74410 48.293 1.15e-58 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1043 - - gmx:100800105 285.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1043 1 20697946 20700264 Lan1g1043 1 20697946 20700264 ECH
Lan12g1243 12 18404388 18407059 Lan1g1043 1 20697946 20700264 LSH