Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1037 ATGGATACAACTCAGCCATTTATGGTTTGGCAATCTAAATATCAAATAAATGAAAACCCATTTCCATTTACGTGCCAATTTTCATCATATGATCATCACATAAGCGGAAATGTTAATGGCTATCCTGCATTGGATAATTGGCCACACGAATTTCCCTTGCAAGATAACCTTATGGATGCTGTCCCTTTTATGGAGTCTTATTACTCTACAGATCCTTTATATGAAATTCCTACAATTGAACCAATACCAAGTGTACAAGTACAAGATTATGATTTTTATGATATTAGGAAAGAGTTTTCTATCTGTAATGAAATTGATGTTGAGTTTGAAGAAACTGGGAAGACAGTGAGGGAAACTGGGAACTTTTGTAAAGGTAAGAGAAGTAGAGAAGAAAGAAGTGGCAGTACTAGAATGTTATCAAGAAAAACTATATCTGAGTACTTCTACATGCCAATAACACAAGCTGCAAGAGAACTTAACGTGGGACTCACACTTCTGAAGAAAAGGTGTAGGGAATTCGGTATTAGAAGATGGCCTCACAGAAAGTTAATTAGTCTCCAAGCTCTGATAATTAATGTGCAGGAACTAGGAAAAGAGGAGGGGCAAGAGAGTGAAATGAAGTTAAGGAATGCGATTGAGATATTGGAGAAGGAAAAGAAGACATTGGAGGAAATGCCAGATATGGAACTAGAAGATAGTACAAAAAGGCTTAGACAAGCATGTTTTAAGGCAAGCTACAAGAAGAAGAAACTTATGGAAATGATGGAATCAAAGTGTTCTTCTACTTCTACTTCTACTCTTAGTGCTACTGCTACAAGTATTCACACAATTTAG 834 0.3621 MDTTQPFMVWQSKYQINENPFPFTCQFSSYDHHISGNVNGYPALDNWPHEFPLQDNLMDAVPFMESYYSTDPLYEIPTIEPIPSVQVQDYDFYDIRKEFSICNEIDVEFEETGKTVRETGNFCKGKRSREERSGSTRMLSRKTISEYFYMPITQAARELNVGLTLLKKRCREFGIRRWPHRKLISLQALIINVQELGKEEGQESEMKLRNAIEILEKEKKTLEEMPDMELEDSTKRLRQACFKASYKKKKLMEMMESKCSSTSTSTLSATATSIHTI* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1037 277 PANTHER PROTEIN RKD4 47 264 IPR044607 GO:0003700
Lan1g1037 277 Pfam RWP-RK domain 139 185 IPR003035 -
Lan1g1037 277 PANTHER PROTEIN RKD1-RELATED 47 264 - -
Lan1g1037 277 Coils Coil 198 225 - -
Lan1g1037 277 ProSiteProfiles RWP-RK domain profile. 120 206 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1037 Lan-Chr1 20660213 20661940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1037 19 250 AtRKD Transcription Factor Family AT1G18790 47.660 1.76e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lan1g1037 RWP-RK 5.9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1037 - - gmx:100788666 295.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1248 12 18430086 18431215 Lan1g1037 1 20660213 20661940 LSH
Lan1g1037 1 20660213 20661940 Lan1g0091 1 711007 712424 LSH