Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1036 ATGGTGAGACCCCCTTGCTGTGAAAAAAATGGGATTAAGAAAGGACCTTGGACTCCAGAAGAGGACATCATTTTGGTCTCTTACATTCAAGAACATGGCCCTGGAAATTGGAGATCCCTTCCAACTAATACAGGTTTGATGAGATGTAGTAAAAGTTGCAGACTTAGATGGACTAATTATCTTAGACCAGGTATTAAACGAGGTAACTTCACTGATCATGAGGACAAGATGATAATCCACCTTCAAGCTCTTTTGGGCAATAGATGGGCTGCTATAGCATCTTATCTTCCACAAAGGACAGATAATGACATAAAAAATTACTGGAATACCCATTTGAAGAAGAAACACAACAAGGTTCAAAGTGAAGGAGATGATGGGCAAGAAGGACATTTTTCATCTTCTTCACAATCACAAACAAAGGGTCAATGGGAGAGAAGGTTACAAACTGATATCAAAATGGCCAAACAAGCCTTGTCTGAGGCTTTGTCCCTTCAGAAACCAACAACTAGTAGTACTAGTTTTACTTTCCCTGAAACCAAACCCTCAACTTCTCATATTCACACTACTACAAGTTCAACCTACCCCTTAAAACAATCAAACATTAATGCATCCTCATATGCATCAAGCTATGAAAACATATCTAAATTGCTAGAAAAATGGATGATGAAATCCCCAAAGACTCCAAATTTATTCAGCAACAATATGGTCACTACAGGATCAAGTTGTAGTGAAGGAGCAAATAGCACCACTGATCAATGTACACAAGATCATGCTTTTGACTCATTATTGAGCTTCAACTCCTCCAAATCTGTTGAAGAACTCAACAACAACAACAACAACAACTTGAGAACCAATGAGGCTGATTTCTTCCAAGATCAAAAGAAGACAAACATGGAGACTAATCATCATCAAGTGCCTCTTACTTTGCTAGATAATTGGCTTTTTGATGATGAAGAATGCCATGAAGATCTAATGAACATGTCACTCGAGGAAAGTACCTCAGGTTTGTTTTAG 1014 0.3817 MVRPPCCEKNGIKKGPWTPEEDIILVSYIQEHGPGNWRSLPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEDKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKHNKVQSEGDDGQEGHFSSSSQSQTKGQWERRLQTDIKMAKQALSEALSLQKPTTSSTSFTFPETKPSTSHIHTTTSSTYPLKQSNINASSYASSYENISKLLEKWMMKSPKTPNLFSNNMVTTGSSCSEGANSTTDQCTQDHAFDSLLSFNSSKSVEELNNNNNNNLRTNEADFFQDQKKTNMETNHHQVPLTLLDNWLFDDEECHEDLMNMSLEESTSGLF* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1036 337 CDD SANT 69 112 IPR001005 -
Lan1g1036 337 SMART sant 13 63 IPR001005 -
Lan1g1036 337 SMART sant 66 114 IPR001005 -
Lan1g1036 337 CDD SANT 16 61 IPR001005 -
Lan1g1036 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lan1g1036 337 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 322 - -
Lan1g1036 337 MobiDBLite consensus disorder prediction 126 144 - -
Lan1g1036 337 Gene3D - 13 66 - -
Lan1g1036 337 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lan1g1036 337 Gene3D - 68 144 - -
Lan1g1036 337 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lan1g1036 337 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lan1g1036 337 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 322 - -
Lan1g1036 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Lan1g1036 337 MobiDBLite consensus disorder prediction 115 144 - -
Lan1g1036 337 MobiDBLite consensus disorder prediction 169 192 - -
Lan1g1036 337 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lan1g1036 337 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1036 Lan-Chr1 20649927 20651930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1036 1 337 MYB Transcription Factor Family AT5G62470 50.396 1.64e-107 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan1g1036 Myb_DNA-binding 1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1036 K09422 - gmx:100794319 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1036 1 20649927 20651930 Lan1g1036 1 20649927 20651930 ECH
Lan12g1250 12 18448037 18449631 Lan1g1036 1 20649927 20651930 LSH