Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1010 ATGTCTCTTATGTTTAACTCTCATCGTTTCAGATCCATTCTCTACCTTTCACAATGTTACATTCACCCTTCACCTCTGAACTTCTTCTCCACTGCTTCAAATCACAAAGCTTTCACCGTTCCCTATCTCATAAACAAATTTGGTTTTTCACCAGAAATCGCTCTCAAAACCTCTAAGCGAGTTCATTTCGATAACCCCCAAAAACCTGAATCTGTTCTCGCTTTCTTCAAAACCCATGGTTTCTCCGATACCCAGATAAACAGTGTTATGCGTAGAGCACCAGAGCTTCTCACATGCGATCCCATCAATAGGGTTTTGCCAAAGTTTCAATTTTTAATCTCTAAAGGTGCTTCCCCTTTTGATGTTGTTGCAACAGTGTCACGTAGCCCTGATTTTCTTCGTAAGAGCCTTGAAAATCATATAATCCCTGCTTTTGAATTGGTAAGACGGTTCAGCCCTTCTGATGAAAGAGCCATTGCTTGTGTTATTGCTTCTCCTACTTCAATTTCCGATGCACGTGTACAACACAATGTTAATATGTTGATTGATGAAGGTGTCACACATAACAACATTTACCATTTGTTTCGTACTAGGCCTACTGTACTGTGTTCGAATGATCTCGGAAAAGTCTTGGATGAAGTCAAAAAAATGGGTTTTAATCCTTCCAAGACAAGTTTTAGTGTTGCAATGTTGGCGAAAAAGGCTATTACTAAAGCTCAGTGGGATGCTAAAATTGATGCCTTTAAGACATGGGGTTGGTCTGAACAAGAAATTTTAGAAGCCTTTAAGAGGCTGCCACAATTTATGCTACGATCTCCGGGTAAACTCAATGCAGTGATAAGCTTTTGGGTGGGTCAGCTTGGTTGGGATCGTTCAACCCTTCTCAGAGCACCAGTGATTTTCGGATATAGCTTGGAGAAAAGGCTTATTCCAAGGGCTTCTGTTGTCAAGGAACTTCTCTCCAAAGGTTTGATGAGAAAGGATGCGAATTTAGTTACACCATTTGGTTTATCTGAGGATATGTTCCTCGAGAAGTTTGTGAGATGTCTTGATGAGAAAGATGCATCTCGGCTATTAAAGCTATATCAGAAAGAACTGCAGCATCTCTCGGTTGGTTAA 1119 0.4048 MSLMFNSHRFRSILYLSQCYIHPSPLNFFSTASNHKAFTVPYLINKFGFSPEIALKTSKRVHFDNPQKPESVLAFFKTHGFSDTQINSVMRRAPELLTCDPINRVLPKFQFLISKGASPFDVVATVSRSPDFLRKSLENHIIPAFELVRRFSPSDERAIACVIASPTSISDARVQHNVNMLIDEGVTHNNIYHLFRTRPTVLCSNDLGKVLDEVKKMGFNPSKTSFSVAMLAKKAITKAQWDAKIDAFKTWGWSEQEILEAFKRLPQFMLRSPGKLNAVISFWVGQLGWDRSTLLRAPVIFGYSLEKRLIPRASVVKELLSKGLMRKDANLVTPFGLSEDMFLEKFVRCLDEKDASRLLKLYQKELQHLSVG* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1010 372 SMART mt_12 123 154 IPR003690 GO:0003690|GO:0006355
Lan1g1010 372 SMART mt_12 291 325 IPR003690 GO:0003690|GO:0006355
Lan1g1010 372 SMART mt_12 87 118 IPR003690 GO:0003690|GO:0006355
Lan1g1010 372 SMART mt_12 192 220 IPR003690 GO:0003690|GO:0006355
Lan1g1010 372 SMART mt_12 259 290 IPR003690 GO:0003690|GO:0006355
Lan1g1010 372 Pfam mTERF 169 341 IPR003690 GO:0003690|GO:0006355
Lan1g1010 372 Pfam mTERF 73 202 IPR003690 GO:0003690|GO:0006355
Lan1g1010 372 PANTHER CGI-12 PROTEIN-RELATED 17 367 IPR003690 GO:0003690|GO:0006355
Lan1g1010 372 Gene3D Transcription termination factor 3, mitochondrial 168 353 IPR038538 -
Lan1g1010 372 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 17 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1010 Lan-Chr1 20507912 20509386 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lan1g1010 mTERF 2.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1010 K15032 - gmx:102666622 340.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1010 1 20507912 20509386 Lan19g0880 19 16275050 16277659 PCT
Lan19g0880 19 16275050 16277659 Lan1g1010 1 20507912 20509386 PCT