Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1008 ATGGAACGGTACGGACACCAAAATGAAGGGTCACAGTCTGATCCGTCACCGGAATGGGGCTATGAAGAGTCATCGTTGCAAGGTGTTGAATCATACCCTCAGCGACCCGATGAGGCTGATTGTATCTACTTTCTGAAGAATGGTTTTTGTGGCTATGGTTCTCGATGCCGCTTCAATCATCCCCTTCACCGTGCCGGAGTTACTGGAGCTGCAAGGATTGGAGTCGGGGAGCACCCGGAACGAGTTGGTCAGCCTTTGTGCCAGTATTATATGAGGATGGGATCATGCAAATTTGGCCCTTCCTGCAAGTACCACCATCCAAGGCAAGGAGCAGGCATTGCTGCCCCAGTGTCACTGAATTATTATGGATATCCATTGCGAACGGGCGAGAAAGAGTGTTCTTATTATTTGAAAACGGGACAATGCAAGTTTGGTACAACTTGTAAATTCCATCATCCACAGCCTGCGGGCATCCAAATTCCAGCACCATCATCAGTTCCCCCAGTTTCCCCTCTGCCTATGCCTATACCTTCACCATTATACCCAACTGTGCAGCCTCCATCTGGTCCGTCATCACAACAATATGGTGTACTGGTTGCAAGGCCACCTTTTCTACCTGGCTCATTAGTTCAGGGCCCCTATGGGCCGATGATGTTGTCCCCTACGATGGTCCCCTTTTCTGGCTGGGGTCCTTATCAGGGTCCTGCAACAAGCCCACTACTTCCTTCTAGTACTCCGTCTAATGTTGGTTCAACACAGTTCTATGGGATAGCCCAGCTACCTTCATCAGCAACAGCCTATGCTGGGCCTTATCAAGCTTCTGGTTCCTTAATTGGTCCTTCTGCCAGTGATCAGAAGGAGCACTCGTTGCCAGAAAGGCCCGATCAACCAGAATGTCAGTATTACATGAAAACAGGGGAATGTAAATTTGGTCCATCATGTAGATATCATCATCCAGCAGACATGAGTGCTCCAAAAGCGAATGTCATCCTTAGTCCTGTGGGTCTTCCTTTGCGCCCGGGGGCATCAGTTTGCACTCATTATACCCAACGTGGTGTTTGTAAGTTTGGTCCTGCTTGCAAATTTGATCATCCTATGGGATCGTTGAGTTATAGTCCTTCTGCTTCTTCCCTGTCCGACATGCCAGTTGCACCCTATCCCGTGGGTTCCTCACGTGGCACTCTTGCCTCGTCATCTTCATCATCAGAGTTGCGGCCTGATCTTGCCTCAGGATCCAGCAAGGAGCCTGGTTCATACAGAATGTCTTCATCAATGAGCACATCAACTGGATCAGTTGGTTTGACCTTGTCAACTGGTGGACCAATTTCTCAATCAGGCACCCAATCATCTGTTCAGAGTTCCAGTCCTGTATCAACTACCAACGCTTCCACGAGTAGCACTGTCACTTACACCTCAAGCTAA 1422 0.4902 MERYGHQNEGSQSDPSPEWGYEESSLQGVESYPQRPDEADCIYFLKNGFCGYGSRCRFNHPLHRAGVTGAARIGVGEHPERVGQPLCQYYMRMGSCKFGPSCKYHHPRQGAGIAAPVSLNYYGYPLRTGEKECSYYLKTGQCKFGTTCKFHHPQPAGIQIPAPSSVPPVSPLPMPIPSPLYPTVQPPSGPSSQQYGVLVARPPFLPGSLVQGPYGPMMLSPTMVPFSGWGPYQGPATSPLLPSSTPSNVGSTQFYGIAQLPSSATAYAGPYQASGSLIGPSASDQKEHSLPERPDQPECQYYMKTGECKFGPSCRYHHPADMSAPKANVILSPVGLPLRPGASVCTHYTQRGVCKFGPACKFDHPMGSLSYSPSASSLSDMPVAPYPVGSSRGTLASSSSSSELRPDLASGSSKEPGSYRMSSSMSTSTGSVGLTLSTGGPISQSGTQSSVQSSSPVSTTNASTSSTVTYTSS* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1008 473 SUPERFAMILY CCCH zinc finger 129 155 IPR036855 GO:0046872
Lan1g1008 473 MobiDBLite consensus disorder prediction 389 473 - -
Lan1g1008 473 MobiDBLite consensus disorder prediction 1 33 - -
Lan1g1008 473 Gene3D - 11 67 - -
Lan1g1008 473 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 463 - -
Lan1g1008 473 SUPERFAMILY CCCH zinc finger 296 321 IPR036855 GO:0046872
Lan1g1008 473 MobiDBLite consensus disorder prediction 391 408 - -
Lan1g1008 473 PANTHER PROTEIN PHOSPHATASE RELATED 1 463 - -
Lan1g1008 473 SUPERFAMILY CCCH zinc finger 342 369 IPR036855 GO:0046872
Lan1g1008 473 Gene3D - 78 162 - -
Lan1g1008 473 ProSiteProfiles Zinc finger C3H1-type profile. 127 155 IPR000571 GO:0046872
Lan1g1008 473 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 84 108 IPR000571 GO:0046872
Lan1g1008 473 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 129 154 IPR000571 GO:0046872
Lan1g1008 473 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 295 319 IPR000571 GO:0046872
Lan1g1008 473 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 37 61 IPR000571 GO:0046872
Lan1g1008 473 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 343 366 IPR000571 GO:0046872
Lan1g1008 473 SMART c3hfinal6 293 320 IPR000571 GO:0046872
Lan1g1008 473 SMART c3hfinal6 339 366 IPR000571 GO:0046872
Lan1g1008 473 SMART c3hfinal6 127 154 IPR000571 GO:0046872
Lan1g1008 473 SMART c3hfinal6 81 108 IPR000571 GO:0046872
Lan1g1008 473 SMART c3hfinal6 35 62 IPR000571 GO:0046872
Lan1g1008 473 SUPERFAMILY CCCH zinc finger 82 109 IPR036855 GO:0046872
Lan1g1008 473 ProSiteProfiles Zinc finger C3H1-type profile. 35 63 IPR000571 GO:0046872
Lan1g1008 473 Gene3D - 282 369 - -
Lan1g1008 473 ProSiteProfiles Zinc finger C3H1-type profile. 81 109 IPR000571 GO:0046872
Lan1g1008 473 ProSiteProfiles Zinc finger C3H1-type profile. 339 367 IPR000571 GO:0046872
Lan1g1008 473 SUPERFAMILY CCCH zinc finger 37 64 IPR036855 GO:0046872
Lan1g1008 473 MobiDBLite consensus disorder prediction 415 473 - -
Lan1g1008 473 ProSiteProfiles Zinc finger C3H1-type profile. 293 321 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1008 Lan-Chr1 20489331 20493052 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1008 1 435 C2H2 Transcription Factor Family AT5G18550 53.377 2.24e-146 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan1g1008 zf-CCCH 4.8e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1008 - - gmx:100789405 680.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1289 12 18673748 18680970 Lan1g1008 1 20489331 20493052 LSH
Lan1g1008 1 20489331 20493052 Lan1g0046 1 249700 253773 LSH
Lan1g1008 1 20489331 20493052 Lan4g0356 4 5820861 5831216 PCT
Lan1g1008 1 20489331 20493052 Lan16g0467 16 4585833 4594863 PCT
Lan4g0356 4 5820861 5831216 Lan1g1008 1 20489331 20493052 PCT
Lan16g0467 16 4585833 4594863 Lan1g1008 1 20489331 20493052 PCT