Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1005 ATGGGGAAGCCGTCCAACTCAGAAGCTTCTTCTTCCGACGAACCACTCTCCGATTCGGAGGAGGAGCAAAACCACCAGATCAACGATCAAGACGATGACGACGAGCTTCAAGCGGTGGCGTGTTCTCCTAGCTCCGGCGACGATGAAAATCTTCCCGATGTAGATCTAGATGCTGACGATAATGAACAGGATGAAGGTAATGTTGATCCTGAAATCAGCAGGCGTGAGAAGGCTAGATTAAGAGAGATGCAACAAATTAAGAAGCAGAAGATTCAGGAGATGTTGGATGCACAAAATGCAGCTATTGATTCTGATATGAACAATAAAGGAAAAGGCCGATTGAAGTATCTCTTACAGCAAACTGAGCTGTTTGCTCATTTTGCCAAAGGAGATCAGTCATCCTCTCAGAAGAAGACAAAAGGAAGGGGACGCCATGCATCGAAAGTTACAGAAGAAGAGGAAGATGAGGAATACCTCAAAGAAGAAGAAGATGGTTTAGCAAGCACACGGCTGTTGACACAACCATCATGTATCCAAGGGAAGATGAGGGATTACCAACTTGCAGGGCTAAACTGGCTCATACGATTATATGAGAATGGTATAAATGGAATTCTGGCAGATGAAATGGGGCTTGGTAAAACCTTACAAACTATATCTTTATTGGGCTACTTACATGAGTTCAGAGGAATAACAGGACCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGGAATTGGATGAATGAGATTCGGCGCTTTTGTCCTGTATTACGTGCAGTGAAGTTCCTGGGTAACCCTGATGAAAGGAGGCATATAAGGGAGAACTTGTTGGTTGCTGGGAAGTTTGATGTGTGTGTTACAAGTTTTGAAATGGTAATCAAGGAGAAGTCTGCTTTACGCCGATTTAGTTGGCGATACATAGTTATTGATGAAGCACATCGAATCAAGAATGAGAATTCCCTTCTGTCTAAAACAATGAGGCTATACAATACAAACTATCGACTCCTTATAACTGGCACACCACTGCAGAACAATCTTCATGAACTCTGGGCTCTTCTCAACTTTCTTCTGCCTGAAGTATTTAGTTCTGCTGAAACTTTTGATGAGTGGTTTCAGATTTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAACTACACAAAGTACTCCGCCCATTTCTGCTTCGAAGGTTGAAGTCTGATGTTGAGAAAGGGTTGCCACCGAAAAAGGAAACCATTCTCAAAGTAGGCATGTCACAAATGCAGAAACAGTATTATAAGGCATTACTGCAGAAGGATCTTGAGGTTGTCAATGCTGGTGGAGAACGGAAACGTCTCCTAAATATAGCAATGCAGCTACGTAAATGTTGTAATCACCCATATCTCTTCCAAGGTGCCGAACCAGGTCCTCCATATACAACAGGAGATCATCTCATTACAAATGCTGGTAAAATGGTTCTTATGGATAAGTTACTTCCTAAATTGAAAGAGCGTGATTCAAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTGGAGGATTATTTGATGTTTCGCGGTTATCAATATTGTCGCATAGATGGCAATACTGGTGGAGAAGATCGTGATGCTTCCATCGAGGCTTACAACAAACCAGGAAGTGAGAAATTTGTTTTCTTGTTATCTACGCGGGCTGGAGGTCTTGGCATTAATCTTGCCACAGCTGATGTTGTCATTCTCTATGATAGTGACTGGAACCCACAAGTTGACCTGCAAGCTCAGGACCGTGCTCATAGGATTGGTCAAAAGAAAGAAGTTCAAGTTTTCCGATTTTGTACTGAGTATACTATTGAGGAAAAGGTCATTGAAAGGGCTTACAAAAAGCTTGCACTTGATGCTCTAGTGATTCAACAAGGGCGATTAGCTGAGCAGAAGACTGTAAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGTGCGGAAATGGTTTTTAGTTCCAAGGACAATACAATTACAGATGAGGATATAGACAGAATTATTGCTAAAGGAGAGGAAGCAACTGCTGAACTCGATGCTAAGATGAAGAAATTTACTGAAGATGCTATCAAATTTAAGATGGATGACACTGCTGAGCTGTACGATTTTGATGACGAGAAAGATGAGAACAAATTTGATTTCAAAAAAATCGTGAGTGAGAACTGGGTTGAGCCACCAAAAAGAGAGCGAAAGCGCAATTATTCAGAGTCTGAGTACTTCAAGCAAACATTGCGCCAAGGTGGTCCTACTAAACCGAAGGAGCCCCGTATTCCTAGGATGCCTCAATTGCATGATTTCCAGTTTTTCAACACACAAAGGCTGAGTGAGCTGTATGAAAAGGAAGTACGCTATCTCGTGCAAACACATCAGAAGAATCAGTTACAAGACTCAATAGATGTTGATGAACCTGAAGAGACGGGATATCCATTGACTGCTGAAGAGTCGGAAGAAAAGGAGCACCTGCTTGAGAAGGGATTTTCATCATGGACTAGGAAGGATTTTAATACTTTTATTAGGGCTTGTGAAAAGTATGGCCGGAATGATATAAAAGGTATTGCTTCTGAGATGGAAGGAAAAGCAGAGGAGGAAGTTGAAAGATATGCCAAAGTCTTCAAAGAAAGATACAAGGAGTTAAATGATTATGATAGAATTATTAAAAATATTGAAAGAGGGGAAGCAAGAATATCACGGAAAGATGAGATCATGAAAGCTATTGGGAAGAAATTGGACCGCTACAAGAACCCATGGCTAGAGTTGAAAATTCAATATGGGCAAAACAAAGGGAAGTTATACAATGAAGAATGTGACCGATTCATGATATGCATGGTTCACAAACTTGGTTATGGGAATTGGGATGAATTGAAGGCAGCATTTAGAACTTCACCCTTATTTCGTTTTGATTGGTTTGTGAAGTCTCGCACAACACAGGAACTAACAAGGAGGTGTGACACCCTCATCAGACTGGTAGAGAAGGAAAACCAAGAATATGATGAAAGGGAGAGACAAGCTCGTAAAGAGAAGAAACTTGCCAAGAGTATGACAACCCCATCAAAGCGTGCATTGCCAAGACAAACGGAAAGTCCCTCTCAGAAGAAGCGCAAACAGTTAACTATGGATGCCTACGTAACCTCGGGTCAGAGGAGAAAATAA 3174 0.4143 MGKPSNSEASSSDEPLSDSEEEQNHQINDQDDDDELQAVACSPSSGDDENLPDVDLDADDNEQDEGNVDPEISRREKARLREMQQIKKQKIQEMLDAQNAAIDSDMNNKGKGRLKYLLQQTELFAHFAKGDQSSSQKKTKGRGRHASKVTEEEEDEEYLKEEEDGLASTRLLTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPDERRHIRENLLVAGKFDVCVTSFEMVIKEKSALRRFSWRYIVIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWALLNFLLPEVFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLMDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGEDRDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDNTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDENKFDFKKIVSENWVEPPKRERKRNYSESEYFKQTLRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLVQTHQKNQLQDSIDVDEPEETGYPLTAEESEEKEHLLEKGFSSWTRKDFNTFIRACEKYGRNDIKGIASEMEGKAEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELTRRCDTLIRLVEKENQEYDERERQARKEKKLAKSMTTPSKRALPRQTESPSQKKRKQLTMDAYVTSGQRRK* 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1005 1057 MobiDBLite consensus disorder prediction 1005 1021 - -
Lan1g1005 1057 Pfam SLIDE 890 1000 IPR015195 GO:0003677|GO:0005634|GO:0006338
Lan1g1005 1057 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 194 359 IPR014001 -
Lan1g1005 1057 SMART ultradead3 178 370 IPR014001 -
Lan1g1005 1057 Coils Coil 80 100 - -
Lan1g1005 1057 Gene3D - 921 1024 - -
Lan1g1005 1057 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 399 680 IPR027417 -
Lan1g1005 1057 Gene3D ISWI, HAND domain 734 832 IPR036306 GO:0003677|GO:0006338|GO:0031491
Lan1g1005 1057 Pfam HAND 746 827 IPR015194 GO:0003677|GO:0006338|GO:0031491
Lan1g1005 1057 Gene3D - 403 695 IPR027417 -
Lan1g1005 1057 SMART sant 935 996 IPR001005 -
Lan1g1005 1057 SMART sant 833 882 IPR001005 -
Lan1g1005 1057 Gene3D - 183 398 IPR038718 -
Lan1g1005 1057 Pfam Helicase conserved C-terminal domain 487 597 IPR001650 -
Lan1g1005 1057 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 745 835 IPR036306 GO:0003677|GO:0006338|GO:0031491
Lan1g1005 1057 Pfam SNF2-related domain 195 462 IPR000330 GO:0005524|GO:0140658
Lan1g1005 1057 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 397 IPR027417 -
Lan1g1005 1057 MobiDBLite consensus disorder prediction 734 766 - -
Lan1g1005 1057 CDD DEXHc_SMARCA1_SMARCA5 179 399 IPR044754 GO:0005524
Lan1g1005 1057 Gene3D - 833 887 - -
Lan1g1005 1057 MobiDBLite consensus disorder prediction 1 80 - -
Lan1g1005 1057 SMART helicmild6 513 597 IPR001650 -
Lan1g1005 1057 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 7 1057 - -
Lan1g1005 1057 MobiDBLite consensus disorder prediction 1005 1057 - -
Lan1g1005 1057 Gene3D iswi atpase 888 920 - -
Lan1g1005 1057 SUPERFAMILY Homeodomain-like 888 1010 IPR009057 -
Lan1g1005 1057 MobiDBLite consensus disorder prediction 50 66 - -
Lan1g1005 1057 ProSiteProfiles SANT domain profile. 832 884 IPR017884 -
Lan1g1005 1057 CDD SANT 836 880 IPR001005 -
Lan1g1005 1057 CDD SF2_C_SNF 483 608 - -
Lan1g1005 1057 MobiDBLite consensus disorder prediction 128 163 - -
Lan1g1005 1057 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 487 638 IPR001650 -
Lan1g1005 1057 SUPERFAMILY Homeodomain-like 836 886 IPR009057 -
Lan1g1005 1057 Coils Coil 983 1017 - -
Lan1g1005 1057 PANTHER SNF2/RAD54 HELICASE FAMILY 7 1057 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1005 Lan-Chr1 20475861 20483134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1005 203 624 RAD5 or RAD16-like Gene Family AT1G02670 26.535 1.44e-41 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan1g1005 SNF2_N 8.9e-73 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1005 K11654 - gmx:100791510 1892.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1005 1 20475861 20483134 Lan1g0037 1 205735 214079 LSH
Lan1g1005 1 20475861 20483134 Lan16g0460 16 4521027 4529225 PCT
Lan16g0460 16 4521027 4529225 Lan1g1005 1 20475861 20483134 PCT