Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1003 ATGGAAGGAGAACGTCTTGATTTTGGAAAGATGGGATATGGGTGCAAGCATTACAGAAGAAGATGCAGGATTCGTGCACCATGTTGCAATGAGATCTACTCTTGTCGCCATTGTCATAATGATGCTACGAGCATGTTGAAGAACCCCTTTGATCACCACGACCTTGTTCGCCAAGATGTTAAACAAATTATCTGTTCAGTTTGTGACACAGAGCATGAAGTTGCTCAAGTTTGCACAAACTGTGGTGTCAAAATGGGAGAATATTTCTGCAACATCTGCAAATTCTTTGATGATGATACAGAGAAACAACAGTTTCATTGTGATGATTGTGGGATCTGCAGGGTTGGTGGACGAGAGAATTATTTCCACTGCAAGAAGTGCGGGTCTTGCTATTCAGTTAATCTGCGTGATAATCATTTATGTGTTGAGAATTCCATGAGGCATCACTGTCCCATTTGTTATGAGTATCTTTTTGACTCATTGAAAGATACTATTGTTATGAAATGTGGTCACACAATGCACTCTGAATGTTACCAAGAGATGGTAAAACGTGACAAGTACTGTTGTCCCATATGCTCCAAGTCGGTCATCGACATGTCTAGGATGTGGAAGAGAATTGATGAAGAGATTGAAGCTACTGTCATGCCTGACGATTATCGATTGAGGAAGGTGTGGATTCTATGCAATGACTGCAATGACACAACTGAAGCTTACTTCCACATTCTTGGGCAAAAATGTGGTCACTGCAGATCATATAATACTCGTGCAATTGCTCCCCCTGTTCTTCCTCAATAA 795 0.4101 MEGERLDFGKMGYGCKHYRRRCRIRAPCCNEIYSCRHCHNDATSMLKNPFDHHDLVRQDVKQIICSVCDTEHEVAQVCTNCGVKMGEYFCNICKFFDDDTEKQQFHCDDCGICRVGGRENYFHCKKCGSCYSVNLRDNHLCVENSMRHHCPICYEYLFDSLKDTIVMKCGHTMHSECYQEMVKRDKYCCPICSKSVIDMSRMWKRIDEEIEATVMPDDYRLRKVWILCNDCNDTTEAYFHILGQKCGHCRSYNTRAIAPPVLPQ* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1003 264 ProSiteProfiles Zinc finger RING-type profile. 150 193 IPR001841 -
Lan1g1003 264 Gene3D - 223 259 - -
Lan1g1003 264 Pfam CHY zinc finger 15 95 IPR008913 GO:0008270
Lan1g1003 264 ProSiteProfiles Zinc finger CHY-type profile. 8 83 IPR008913 GO:0008270
Lan1g1003 264 SMART ring_2 150 192 IPR001841 -
Lan1g1003 264 SUPERFAMILY RING/U-box 149 200 - -
Lan1g1003 264 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 4 264 - -
Lan1g1003 264 Pfam Zinc-ribbon 197 255 IPR039512 -
Lan1g1003 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 222 IPR013083 -
Lan1g1003 264 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MIEL1-LIKE ISOFORM X1 4 264 - -
Lan1g1003 264 Pfam Zinc finger, C3HC4 type (RING finger) 150 192 IPR018957 GO:0046872
Lan1g1003 264 SUPERFAMILY Zinc hairpin stack 86 143 IPR037275 -
Lan1g1003 264 ProSiteProfiles Zinc finger CTCHY-type profile. 85 149 IPR017921 -
Lan1g1003 264 SUPERFAMILY CHY zinc finger-like 12 84 IPR037274 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1003 Lan-Chr1 20467203 20470919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1003 7 263 C2H2 Transcription Factor Family AT3G18290 39.313 8.90e-54 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1003 K10144 - gmx:100792038 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1003 1 20467203 20470919 Lan1g1003 1 20467203 20470919 ECH
Lan12g0866 12 15739374 15751132 Lan1g1003 1 20467203 20470919 LSH
Lan1g1003 1 20467203 20470919 Lan1g1993 1 35109573 35120700 LSH
Lan1g1003 1 20467203 20470919 Lan19g0640 19 12117384 12120902 PCT
Lan1g1003 1 20467203 20470919 Lan16g0458 16 4504697 4508966 PCT
Lan19g0640 19 12117384 12120902 Lan1g1003 1 20467203 20470919 PCT
Lan16g0458 16 4504697 4508966 Lan1g1003 1 20467203 20470919 PCT