Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1000 ATGGCTTCTGGAGCATTATTTGAGAAGTTAATGACAGTGATGACTTCTGATCATGCTTCAGTTGTTTCAATGAACCTATTTGTTGCTCTTCTTTGCACATGCATTATTCTTGGTCATTTGCTTGAGGAAAATCGATGGATTAATGAATCAATCACTGCACTTCTCATTGGTCTTTGTACAGGGGTTTTTATATTGTTTACAACTGGTGGAAAAAGCTCTCATATATTAGTTTTCAGCCAAGATCTTTTCTTTATTTACCTACTTCCTCCTATCATTTTCAATGCAGGGTTTCAGGTCAAAAAGAAACAATTTTTCCGAAATTTTATGACAATCATGCTCTTTGGTGTAGTTGGTACTTTGATTTCATTCTGCATCATATCACTAGGTGCTATACACTTTTTCCAGAAATTGGATATTGGTTCCCTCAAGATAGGAGATTATCTTGCAATTGGAGCAATATTTTCAGCAACAGATTCTGTTTGCACCTTGCAGGTTCTTAATCAAGATGAGACACCTTTACTATACAGCTTGGTTTTTGGAGAGGGAGTAGTAAATGATGCTACATCTGTAGTGCTCTTCAAAGCAATTCAGAATTTTGATCTCTCCAACATTGACTCCACCACTGCTTTACAGTTAATAGGAAACTTTTTATATTTATTCGTCGCGAGTACTGTACTAGGAATCTTTGCTGGATTGTTGAGTGCTTATATTATTAAACAGCTCTATTTTGGCAAGTTGATAAGGCATTCTACGGATCGTGAGGTTGCTCTTATGATACTAATGGCGTACCTTTCATATATGCTAGCTGAACTATTTTCCTTAAGTGCCATTCTTACCGTGTTCTTCTGTGGCATTGTTATGTCTCACTATACATGGCATAATGTGACAGAAAGCTCAAGAGTGACAACCAAGCATACTTTTGCTACTCTATCATTCATTGCTGAGATCTTTATCTTCCTTTATGTTGGGATGGATGCACTTGACATAGAGAAGTGGAGACTTGTAAGTCAAAGCCCAAAAAAATCAATTGGGGTGAGTTCTATGCTGTTGGCACTTATCCTAGTGGGAAGAGCAGCCTTCGTTTTCCCTCTGTCCTTCTTGTCCAACTTGCATAAGAAGTCTCAAAGTGAGAAAATTGAGTTCAAGCAACAAGTAACAATTTGGTGGGCTGGTCTGATGCGCGGAGCTGTTTCGATTGCACTTGCCTACAATCAGTTTACAAGGCTAGGCCATACTAAATTGAGTGAAAATGCCATCATAATCACAAGTACTATCACTGTTGTACTCTTCAGCACAGTGGTGTTTGGGGTGATGACAAAACCACTTGTGAGGTTATTGCTTCCTTCCTCTAAACACATAATCAGCATACCTTCCCCACCATCCACCCCTAAATCATTCACTGTGCCACTTCTTGGCAATGGACATGATTCAGGGGCCAATATTGGTGGCACCCACCGCATGCCTAGCAGCTTCCGCATGCTCTTAAGGCTTCCCTCTAGTGGGGTACACCACTATTGGCGCAAGTTTGATAATTCTTTCATGCGTCCTGTCTTCGGTGGACGCGGTTTTGTACCTTATGTTCCCGGTTCACCTCTTGAACCAAGTGTGCATCAGTGGCATTAA 1623 0.4023 MASGALFEKLMTVMTSDHASVVSMNLFVALLCTCIILGHLLEENRWINESITALLIGLCTGVFILFTTGGKSSHILVFSQDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGVVGTLISFCIISLGAIHFFQKLDIGSLKIGDYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFKAIQNFDLSNIDSTTALQLIGNFLYLFVASTVLGIFAGLLSAYIIKQLYFGKLIRHSTDREVALMILMAYLSYMLAELFSLSAILTVFFCGIVMSHYTWHNVTESSRVTTKHTFATLSFIAEIFIFLYVGMDALDIEKWRLVSQSPKKSIGVSSMLLALILVGRAAFVFPLSFLSNLHKKSQSEKIEFKQQVTIWWAGLMRGAVSIALAYNQFTRLGHTKLSENAIIITSTITVVLFSTVVFGVMTKPLVRLLLPSSKHIISIPSPPSTPKSFTVPLLGNGHDSGANIGGTHRMPSSFRMLLRLPSSGVHHYWRKFDNSFMRPVFGGRGFVPYVPGSPLEPSVHQWH* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1000 540 Pfam Sodium/hydrogen exchanger family 28 444 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Lan1g1000 540 Gene3D - 143 195 - -
Lan1g1000 540 PANTHER SODIUM/HYDROGEN EXCHANGER 3 7 540 - -
Lan1g1000 540 PANTHER SODIUM/HYDROGEN EXCHANGER 7 540 IPR018422 GO:0006812|GO:0015299|GO:0016021
Lan1g1000 540 PRINTS Na+/H+ exchanger signature 82 93 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lan1g1000 540 PRINTS Na+/H+ exchanger signature 96 110 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lan1g1000 540 PRINTS Na+/H+ exchanger signature 111 119 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lan1g1000 540 PRINTS Na+/H+ exchanger signature 151 161 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1000 Lan-Chr1 20455057 20458800 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1000 4 538 Antiporters AT3G05030 72.089 0.0 793
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1000 - - ccaj:109808409 932.554