Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0991 ATGGTTTCATTGGTTGCCAGTGGTAGCTGTCAAATGTCTCCTTCAGTTGTTCAAGAAAAAGGGAGTAGGAACAAGAGAAAATTCAGGGCTGATCCACCTTTAGGGGAGCCAAATAAGATAATTCCTGCATCTCAACACGAGTGCCTCGGTTATGAGTTCTCTGCTGAGAAATTTGATATAAGCACAGGTCATGTCGAAGCCACTGCTTGTGACCTGTGTAGTATTAACCATGATCATTCCGATGGGTTGAAGCTTGACCTTGGATTGTATAGTCCTGGAAGTTCATGTGAGGCTGGACCTTGTCAACCCAAGGAAGAAGTCGAGGCAGATGAATATGATGATGCTGATTGGAGTGAACTCACGGAAGCCCAGTTAGAAGAACTTGTCTTGAGTAATTTGGATGCCATTTTCAAGAGTGCAATTAGAGAAATTGTTGCATGTGGCTACACTGAAGAAGTTGCTAGTAAGGCAGTCTTAAAGTCTGGCATCTGTTATGGATGTAAAGATACTGTATCTAATATAGTTGACAATACCCTACCCTTTCTTAGGAAAGGCCAAGAAGATTATCCTTCACGAGAGCACCATTTCAAAGATTTAGTGCAACTTGAGAAGTATATCTTGGCTGAATTGGTTTGTGTTCTTCGAGAGGTTAGGCCTTTCTTCAGTACTGGGGATGCTATGTGGTGTTTGTTAATTTGTGATATGAATGTAGCTCATGCTTGTGCAATGGACTGCGACCCTTTAAGTAATAGTTTAGGTTATGGAACTGCTGATGGCTGTTCATCTAATCAAACAGAATTACAGTCAAAAGCAGAAACCAGAGTTCCTGATTTGAGTCTTCCAAGTCCTTGTAAATCAATTCCTGCTGTCTCTCATAATTCTCAATCTAAGAAACCCCTTGTGGCAGGAATTCCAGGTGTAAACAACTTAAAGAATTCTCAAAGTATTGGTGGTCCCTCAGAGAATGAGGGTGTTAGTTGTGGACCTCACTGTGCTGATAAAGCATTTAATGCTACCGGAACATCCCAATCTCCCTCGCTGGAAGAAAAGTGTGGGAATGTTAGGAAGGTCCATTCTGGTAGCAGCAAGAGGGACTACATTCTTCGGCAGAAATCATTTCATGTGGAAAAAATTTATCGGACTTATGGATCTAAAGGGTCTTCAAGAGGAGGGAAGCTGAGTGGCTTAAGTGGTTTAATCTTGGATAAAAAACTTAAATCTGGGTCTGAATCTTCTACCATAAGCTTAAAGAGTGCATCCTTACAGATAAGTAAGGCCACGGGAGTTGATGTGACTCAAGATAATCTTGATGCTAGTTTCTCACCTAATCCTGCTGCCTTTAGTGTGGACTCTGCTGATGCTGTTTTCAGATCATTCAATACTTCATTTTCAGTGCATGCAGCAAATAATATTCCTGCTTTCAGTAGCCCTGGTTCATTATCACTTACAGATACTGATCTTTCTCTTTCATTGTCTTCAAAAACCATGTCTACAGCACCTGTGTGTGCACCTAATAGTAGTCATGTGGGGATCCCATACAACAAGTCCCAAGGGCAGTGGGTACCCCAGGATAAAAAGGATGAGATGATTTTGAAGCTTGTTCCAAGGGTCCGGGAGCTGCAAAATCAGCTTCAAGAATGGAATGAGTGGGCCAATCAAAAGGTAATGCAGGCTGCTCGACGACTGAGTAAGGACAAGGCTGAGCTTAAGACACTAAGGCAAGAGAAAGAGGAAGTTGAACGTCTTAAAACAGAGAAGCGGTCTCTTGAGGAAAACACTGTGAAGAAACTCTCGGAGATGGAAAATGCCTTGTGTAAAGCTAGTGGGCAGGTACTGCGAGCTAATGCTGCGGTCCAGAAGCTTGAGGTGGAGAATGCTGCACTGAGGATAGAGATGGAGGCTGCTAAGCTATGTGCTTCAGAGACTGCATTTAACTGTCAAGAGATCTCAAGCAGAGAAAAGAAAACCCAATTGCAATTTCAGTCATGGGAAAAGCAGAAGTTCTTGCTTCAGGAAGAGCTAGTGAGTGAAAAACGCAAATTGGCACAGCTAGTTCAGGAGTCAGAGCAAGTTAAAATGCAACAAGAGCAAGTTCAGGCTAGATGGCAGCAGGAAGCAAAGGCAAAAGAAGAACTTCTCTTACAAGCCAGTGCTATAAGGAAAGGAAGAGAACAAATTGAGGAGTTAGCAAAATCCAAGGAGGATATGACCAAATCGAAAGCAGAGAGGAATGTGCAAAGGTACAAAGATGATATCCTTAAACTTGAAAAAGAAATTGCACAACTGAGACTGAAGAGTGACTCTTCCAAGATTGCTGCACTGAGGATGGGCATTGATGGCAGTGATGGCAGCAGATCCGCTGACACGAAAAATGGCAGTGCTCTAGAGGAACCGAGGACTTCTTTTATTTCAGAACTGGTAAGTGATTACTCAGTGACAGGCGGCGTGAAACGGGAAAGGGAATGTGTGATGTGCCTTTCTGAGGAGTTGTCTGTGGTATTCCTCCCATGTGCTCATCAGGTTGTTTGCACAACATGTAATGAGCTCCATGAAAAACAGGGTATGCAAGATTGTCCTTCTTGCAGGAGCCTCATCCAGCGGCGCATTCCTGTCCGTTATAGCCATATTTAA 2631 0.4306 MVSLVASGSCQMSPSVVQEKGSRNKRKFRADPPLGEPNKIIPASQHECLGYEFSAEKFDISTGHVEATACDLCSINHDHSDGLKLDLGLYSPGSSCEAGPCQPKEEVEADEYDDADWSELTEAQLEELVLSNLDAIFKSAIREIVACGYTEEVASKAVLKSGICYGCKDTVSNIVDNTLPFLRKGQEDYPSREHHFKDLVQLEKYILAELVCVLREVRPFFSTGDAMWCLLICDMNVAHACAMDCDPLSNSLGYGTADGCSSNQTELQSKAETRVPDLSLPSPCKSIPAVSHNSQSKKPLVAGIPGVNNLKNSQSIGGPSENEGVSCGPHCADKAFNATGTSQSPSLEEKCGNVRKVHSGSSKRDYILRQKSFHVEKIYRTYGSKGSSRGGKLSGLSGLILDKKLKSGSESSTISLKSASLQISKATGVDVTQDNLDASFSPNPAAFSVDSADAVFRSFNTSFSVHAANNIPAFSSPGSLSLTDTDLSLSLSSKTMSTAPVCAPNSSHVGIPYNKSQGQWVPQDKKDEMILKLVPRVRELQNQLQEWNEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKTEKRSLEENTVKKLSEMENALCKASGQVLRANAAVQKLEVENAALRIEMEAAKLCASETAFNCQEISSREKKTQLQFQSWEKQKFLLQEELVSEKRKLAQLVQESEQVKMQQEQVQARWQQEAKAKEELLLQASAIRKGREQIEELAKSKEDMTKSKAERNVQRYKDDILKLEKEIAQLRLKSDSSKIAALRMGIDGSDGSRSADTKNGSALEEPRTSFISELVSDYSVTGGVKRERECVMCLSEELSVVFLPCAHQVVCTTCNELHEKQGMQDCPSCRSLIQRRIPVRYSHI* 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0991 876 Pfam Zinc finger, C3HC4 type (RING finger) 819 867 - -
Lan1g0991 876 ProSiteProfiles Zinc finger RING-type profile. 822 862 IPR001841 -
Lan1g0991 876 Coils Coil 611 638 - -
Lan1g0991 876 Coils Coil 555 599 - -
Lan1g0991 876 SUPERFAMILY RING/U-box 817 869 - -
Lan1g0991 876 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 808 872 IPR013083 -
Lan1g0991 876 Coils Coil 738 765 - -
Lan1g0991 876 MobiDBLite consensus disorder prediction 1 19 - -
Lan1g0991 876 Coils Coil 674 701 - -
Lan1g0991 876 MobiDBLite consensus disorder prediction 1 36 - -
Lan1g0991 876 PANTHER OS05G0141500 PROTEIN 5 875 - -
Lan1g0991 876 Pfam Family of unknown function (DUF6592) 132 243 IPR046527 -
Lan1g0991 876 PANTHER OS05G0141500 PROTEIN 5 875 IPR046934 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0991 Lan-Chr1 20388240 20392535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0991 822 871 C3H Transcription Factor Family AT1G73950 44.000 4.84e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0991 - - gsj:114420104 1192.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1300 12 18729062 18733268 Lan1g0991 1 20388240 20392535 LSH
Lan1g0991 1 20388240 20392535 Lan1g0021 1 101362 105509 LSH
Lan1g0991 1 20388240 20392535 Lan4g0373 4 5980404 5984109 PCT
Lan4g0373 4 5980404 5984109 Lan1g0991 1 20388240 20392535 PCT