Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0980 ATGGGGAGCAAGGAGGCTAAGTTCCCACCTCAGAGTCAGGAAACACAGCCAGGCAAAGAACATATAATGGAACCACTCCCACAAGCCATACATCCAAACTACAAGCCCGCGAATAAGCTTCAGGGAAAGGTGGCATTGGTGACTGGAGGTGACTCTGGGATAGGCAGAGCTGTATGCTTGAGTTTTGCTAAAGAGGGAGCAACAGTGGCCTTTACATACGTGAAAGGCCATGAGGAGAAGGATAAGGATGATACTCTGAAGATGCTACTAGATGCTAAAACAAGTGGTGCTCAAGATCCATTGGCAATAGCAGCAGATATTGGATATGAGGAAAACTGCAAGAAGGTCATTGAAGTTGTGGTAAAAGAATACGGACGCATTGATGTTCTGGTGAACAATGCAGCTGAGCAGCACTTGAAAAACTCTGTAGAGGAAATCACTGAACAGCAGCTTCTAAGAGTCTTCAGGACCAATATCTTTTCACATTTCTTCTTGGTCAGGCATGCAGTGAAGCACATGAAAGAAGGGAGTTGCATTATCAACTCAACTTCAGTTAACCCATACAGTGGGAATCCAGAATCAGTGGACTATACTGCCACAAAGGGAGGCATAGTGGCCTTCACTAGAGGTCTTTCTCAACAGCTGGTGAGCAAGGGGATTCGGGTGAATGCGGTGGCTCCGGGACCAGTTTGGACGCCGATACAACCAGGTTCCAAGCCTGGTGAGATGATAGAGAACTTGGGTTGTGAAGTGCCAATGAAGCGTGCAGGTCAGCCATGTGAAATTGCACCATGTTATCTATTCCTGGCATCCCTTCCGGAATCTTCCTACTATACTGGCCAAGTCCTTCATCCAAATGGTGGAATGATAGTCAATACTTAA 882 0.4649 MGSKEAKFPPQSQETQPGKEHIMEPLPQAIHPNYKPANKLQGKVALVTGGDSGIGRAVCLSFAKEGATVAFTYVKGHEEKDKDDTLKMLLDAKTSGAQDPLAIAADIGYEENCKKVIEVVVKEYGRIDVLVNNAAEQHLKNSVEEITEQQLLRVFRTNIFSHFFLVRHAVKHMKEGSCIINSTSVNPYSGNPESVDYTATKGGIVAFTRGLSQQLVSKGIRVNAVAPGPVWTPIQPGSKPGEMIENLGCEVPMKRAGQPCEIAPCYLFLASLPESSYYTGQVLHPNGGMIVNT* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0980 293 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 41 291 IPR036291 -
Lan1g0980 293 PANTHER NADPH-DEPENDENT ALDEHYDE REDUCTASE-LIKE PROTEIN, CHLOROPLASTIC-RELATED 2 292 - -
Lan1g0980 293 PRINTS Glucose/ribitol dehydrogenase family signature 44 61 IPR002347 -
Lan1g0980 293 PRINTS Glucose/ribitol dehydrogenase family signature 125 136 IPR002347 -
Lan1g0980 293 PRINTS Glucose/ribitol dehydrogenase family signature 197 216 IPR002347 -
Lan1g0980 293 PRINTS Glucose/ribitol dehydrogenase family signature 218 235 IPR002347 -
Lan1g0980 293 PRINTS Glucose/ribitol dehydrogenase family signature 252 272 IPR002347 -
Lan1g0980 293 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE SDR-RELATED 2 292 - -
Lan1g0980 293 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 184 212 IPR020904 GO:0016491
Lan1g0980 293 Gene3D - 2 291 - -
Lan1g0980 293 Pfam Enoyl-(Acyl carrier protein) reductase 52 289 - -
Lan1g0980 293 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 136 IPR002347 -
Lan1g0980 293 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 177 185 IPR002347 -
Lan1g0980 293 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 197 216 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0980 Lan-Chr1 20322741 20324155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0980 39 291 Acyl Lipid Metabolism Gene Families AT1G24360 29.572 1.31e-26 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0980 - - gmx:100809384 490.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0629 17 5409020 5412159 Lan1g0980 1 20322741 20324155 PCT
Lan18g0654 18 11662986 11671435 Lan1g0980 1 20322741 20324155 PCT
Lan6g0633 6 5573549 5577081 Lan1g0980 1 20322741 20324155 PCT
Lan1g0980 1 20322741 20324155 Lan17g0629 17 5409020 5412159 PCT
Lan1g0980 1 20322741 20324155 Lan18g0654 18 11662986 11671435 PCT
Lan1g0980 1 20322741 20324155 Lan6g0633 6 5573549 5577081 PCT