Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0979 ATGATGATGGATACTCACGCTCTCTTCTCACGCTCACTCTCACTCTCGCATCTTCCATTTCATAACAAACATGTTTCTTCTTCTTCTTCTTATCATAGCAAACATTCCATGGTTACCCTCAACCGTGTCTCTAGTTTCACAACTCCAGAAGCCTTACTGAGTTTGAAAGAAATATGTGAAGGTCATGTTCCCAAGCATGTTTTGAAAAGGATGGAAGATATTGGATATGTGATGCCTACTGATGTTCAGAGACAAGCACTCCCTTCTCTTTTTTCAGGCCGTGATTGCATTATTCATGCTCAGACAGGTTCTGGGAAGACACTTACTTACCTGCTTTTGATATTCTCAATCATCAACAATACAAAATCTTCTGTTCAAGCTCTTGTTTTGGTCCCAACCCGTGAACTTGGTATCCAAGTTACTAAAGTTGCTAGGATGTTAGCAACAAAGCCAAGTGGAGTTGAAGATGACCAAAAGTCATGTACCATCATGGCTCTCTTGGATGGAGGAACCTTGAAAAGACACAAGAGTTGGTTAAAGGCAGAGCCTCCAACAATAGTGATCGCAACAGTTGCAAGTTTAAGCCAAATGCTGGAAAGGCAATTTTTTATGCTTCAATCTGTGCGGGTGCTGGTAGTTGATGAGGTTGACTTCATTTTCAATTCTTCAAAGCAAACCAGTTCTCTTCGAAAGCTTTTGAATTCGTATTCATCTTGTGATAACCGTCAGACAGTTTTTGCTAGTGCATCTATACCACAGCACAGACGATTTCTTCATGACTGTGTGCAGCAGAAATGGACTAAGCGTGATGTGGTCCATATTCATGTCAGTCCAGTGGAGCCCATGCCATCTCGCCTTTGTCATAGTTTTATTATATGTGATGCCAAAAGGAAACTGGAAACACTGTTATCCTTGATACAATCTGACTCACCTGAGTCTGGCATTATATTTGTCGGTGAGCAGTCTGAGAAGTCAAAAAAGGCTGGAAATTCTCCATCTACATCCCTTGTGTCTGACTTTCTGAAGGCATCATATCAAGGTTCTTTAGATATCTTCCTTCTTGAGGATGACATGAATTTCAATAGCCGAGCAGCTTCACTATTGGAGGTTAGAAAAGGAGGTGGGTATCTTCTTGTAGCAACAGATATAGCTGCTAGAGGAGTTGACCTTCCTGAAATGTCTCACATTTACAACTTTGATCTGCCAAGGACTGCCATAGATTATCTTCACCGAGCTGGGAGGACTTGTAGGAAACCCTTTTCTGAAATGAAATGTACTGTTACCACCATTATAGTTCCAGAGGAGCGCTTTGTTCTGCAGAAATATGAAAATGAGATGATGTTTAACTGTGAAGAGCTTATTCCATAA 1368 0.4101 MMMDTHALFSRSLSLSHLPFHNKHVSSSSSYHSKHSMVTLNRVSSFTTPEALLSLKEICEGHVPKHVLKRMEDIGYVMPTDVQRQALPSLFSGRDCIIHAQTGSGKTLTYLLLIFSIINNTKSSVQALVLVPTRELGIQVTKVARMLATKPSGVEDDQKSCTIMALLDGGTLKRHKSWLKAEPPTIVIATVASLSQMLERQFFMLQSVRVLVVDEVDFIFNSSKQTSSLRKLLNSYSSCDNRQTVFASASIPQHRRFLHDCVQQKWTKRDVVHIHVSPVEPMPSRLCHSFIICDAKRKLETLLSLIQSDSPESGIIFVGEQSEKSKKAGNSPSTSLVSDFLKASYQGSLDIFLLEDDMNFNSRAASLLEVRKGGGYLLVATDIAARGVDLPEMSHIYNFDLPRTAIDYLHRAGRTCRKPFSEMKCTVTTIIVPEERFVLQKYENEMMFNCEELIP* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0979 455 Gene3D - 283 454 IPR027417 -
Lan1g0979 455 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 58, CHLOROPLASTIC 28 454 - -
Lan1g0979 455 CDD DEADc 67 262 - -
Lan1g0979 455 Gene3D - 19 266 IPR027417 -
Lan1g0979 455 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 28 454 - -
Lan1g0979 455 Pfam DEAD/DEAH box helicase 80 253 IPR011545 GO:0003676|GO:0005524
Lan1g0979 455 Pfam Helicase conserved C-terminal domain 298 417 IPR001650 -
Lan1g0979 455 CDD SF2_C_DEAD 288 417 - -
Lan1g0979 455 SMART ultradead3 75 285 IPR014001 -
Lan1g0979 455 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 421 IPR027417 -
Lan1g0979 455 SMART helicmild6 335 419 IPR001650 -
Lan1g0979 455 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 87 269 IPR014001 -
Lan1g0979 455 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 298 455 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0979 Lan-Chr1 20318876 20322732 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0979 26 444 Eukaryotic Initiation Factors Gene Family AT1G72730 25.173 7.82e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0979 - - ahf:112763379 711.064