Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0960 ATGGAAGGGGGAATACCACGAACAGTGGATGAAGTTTTCACAGACTTTAAGGGCAGACGTGCTGGTCTCATTAAGGCCCTTACTACTGATGTTGAAAGGTTTTACCAGCAGTGCCATCCTGAGAAGGAGAATTTGTGTCTGTATGGATTTCCAAATGAAACATGGGAAGTGAATTTACCAGTTGAGGAAGTGCCTCCTGAACTTCCAGAGCCAGCATTAGGTATAAACTTTGCTAGGGATGGGATGCAAGAGAAGGATTGGTTATCACTTGTTGCTGTTCACACTGACTCCTGGCTCCTTGCTGTTGCCTTCTATTTTGGTGCCCGCTTTGGATTTGGTAAGAATGAAAGGAAAAGGCTTTTTCAGATGATAAATGATCTCCCAACTATCTTCGAACTTGTCACGGGAAGTGCTAAGCAATCAAAGGACCAACCAGCTTCTGCTGCTCACAACAATGGTACCAAATACAAATCAAGTGGAAAGTCCCACCAGTCTGAGTCTGAGGCCAAGGGAGTGAAGGATGATGACAGTGGAGGAGGAGAAGACGACGAGCAAGGTGCAACATGTGGTGCTTGTGGTGACAATTATGGCACTGATGAATTCTGGATCTGTTGCGACATGTGTGAGAGATGGTTCCATGGCAAATGTGTTAAAATTACTCCTGCTAAGGCTGAGCACATCAAGCAATACAAGTGCCCAAGCTGCAGTAACAAGAAGGCTAGAGTTTGA 729 0.4527 MEGGIPRTVDEVFTDFKGRRAGLIKALTTDVERFYQQCHPEKENLCLYGFPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHTDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPTIFELVTGSAKQSKDQPASAAHNNGTKYKSSGKSHQSESEAKGVKDDDSGGGEDDEQGATCGACGDNYGTDEFWICCDMCERWFHGKCVKITPAKAEHIKQYKCPSCSNKKARV* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0960 242 MobiDBLite consensus disorder prediction 141 160 - -
Lan1g0960 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 237 IPR013083 -
Lan1g0960 242 PANTHER CPG BINDING PROTEIN 4 242 IPR045104 GO:0006355|GO:0042393
Lan1g0960 242 SUPERFAMILY FYVE/PHD zinc finger 177 239 IPR011011 -
Lan1g0960 242 CDD PHD_AL_plant 189 238 IPR044104 -
Lan1g0960 242 Pfam Alfin 8 135 IPR021998 GO:0006355|GO:0042393
Lan1g0960 242 SMART PHD_3 188 236 IPR001965 -
Lan1g0960 242 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 6 4 242 - -
Lan1g0960 242 MobiDBLite consensus disorder prediction 141 184 - -
Lan1g0960 242 Pfam PHD-finger 189 238 IPR019787 -
Lan1g0960 242 MobiDBLite consensus disorder prediction 161 177 - -
Lan1g0960 242 ProSiteProfiles Zinc finger PHD-type profile. 186 238 IPR019787 -
Lan1g0960 242 ProSitePatterns Zinc finger PHD-type signature. 189 235 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0960 Lan-Chr1 20227311 20228707 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0960 1 239 Alfin-like Transcription Factor Family AT1G14510 76.800 3.19e-121 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lan1g0960 Alfin 5e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0960 - - gmx:100170698 436.032