Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0959 ATGGAACTTTCCATTGAGGAAGGAGAAATCCCAATCCCAATCCCAATCCCAATAAACACTAATATTAATATTTATGGTGATGGACACAATACGATTCCTCTTCCTACTTCAAATGGGGAAGAGGATCATCATCATCATAATCATCATGTTCATGGATCTGAAGGACCCTACAACAAGAAGCAGCAGAAAGTGGTAAGGTACAGAGAATGCCTAAAGAACCATGCAGCTGCAATGGGAGGAAATGCCACTGATGGTTGTGGTGAGTTCATGCCAAGTGGTGAAGATGGTACCATTGAAGCTTTCAACTGCTCAGCCTGCCATTGCCACAGAAACTTCCACAGAAAAGAAGTAGAAGGTGACCCCTCTCCTCCTCCTCCTCCTCCTCCTCATGACCTTTTCAATTTCAGCAGGAGGAAATTCCTTATTGGCCCTCCACATCATCACAAGAACAATAATATCTTACCTCCTGAGGCTCTGGGGTACCCTACACCTACAAGAACTGTACCGCCACATCACATGATAATGCCTTACAACATAGGAGGGCCACTACTTGCAGCTTCAGAATCTGATGAACAAGAAGAGGGTGGTGTGGCTAGATCAGCAGCAGCAGCACAGTTATTAGTGAAGAAAAGGCACAGAACAAAGTTCAGCCAGGAGCAGAAGGAGAAAATGCTGAGCTTTGCGGAGAAGGTTGGGTGGAAAATTCAGAAGCACGAGGAGTCAGTGGTGCAACAGTTCTGTCAAGATATTGGGGTCAAGAGAAGAGTGCTCAAGGTTTGGATGCATAACAATAAGCACAATCTGGCCAAAAAGATGAATCATCTCCTACCTCCACCTCCACCTCCACCTCCTTAA 855 0.4538 MELSIEEGEIPIPIPIPINTNINIYGDGHNTIPLPTSNGEEDHHHHNHHVHGSEGPYNKKQQKVVRYRECLKNHAAAMGGNATDGCGEFMPSGEDGTIEAFNCSACHCHRNFHRKEVEGDPSPPPPPPPHDLFNFSRRKFLIGPPHHHKNNNILPPEALGYPTPTRTVPPHHMIMPYNIGGPLLAASESDEQEEGGVARSAAAAQLLVKKRHRTKFSQEQKEKMLSFAEKVGWKIQKHEESVVQQFCQDIGVKRRVLKVWMHNNKHNLAKKMNHLLPPPPPPPP* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0959 284 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 209 265 IPR006455 -
Lan1g0959 284 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 40 272 - -
Lan1g0959 284 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 40 272 - -
Lan1g0959 284 MobiDBLite consensus disorder prediction 38 59 - -
Lan1g0959 284 Pfam ZF-HD protein dimerisation region 65 117 IPR006456 -
Lan1g0959 284 MobiDBLite consensus disorder prediction 36 59 - -
Lan1g0959 284 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 66 117 IPR006456 -
Lan1g0959 284 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 67 116 IPR006456 -
Lan1g0959 284 SUPERFAMILY Homeodomain-like 208 270 IPR009057 -
Lan1g0959 284 Gene3D - 194 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0959 Lan-Chr1 20215259 20217025 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0959 64 273 ZF-HD Transcription Factor Family AT1G14440 54.751 9.75e-71 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lan1g0959 ZF-HD_dimer 1.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0959 - - gmx:100805652 315.079