Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0943 ATGTCTACTACAATATCTTGTGATTTTTCTTCTTTTGAATCTGTTCAACACTACCTTCTTGAAAATGATTCTGTTGACAACATTCTCATGAGTACTAATACCTACAATTCATTTCAAAGCCCAAGTGGTTCCAATGACTTACACAAATCACCAACATGTGAAGAGGAAGTGGTGCGTGTTGTGAACGCGCCACCAACATGGAAGCACTACAGGGGTGTGAGGCGTAGGCCATGGGGGAGGTTTGCGGCGGAGATAAGGGACCCAAAGAAGAATGGTGCAAGAGTTTGGCTTGGCACTTATGATACGGAGGAGGAAGCTGGTTTGGCTTATGATAGAGCTGCTTTCCAAATGCGTGGCCACAAGGCCAAGCTCAATTTTCCTCATCTCATTGGCTCCGATACAAAATCGGAGCCAATGAGAATGGTCGTCGCTTCTAAGTGGGAGCCTTGTTCAGATGAGTGTCATGTGTCAAATAAGAGAAAGAATGTAATGAATCTATTGAATAGGTTAGCGAGAAATAGAAGCCAAGTATTGTAG 537 0.4358 MSTTISCDFSSFESVQHYLLENDSVDNILMSTNTYNSFQSPSGSNDLHKSPTCEEEVVRVVNAPPTWKHYRGVRRRPWGRFAAEIRDPKKNGARVWLGTYDTEEEAGLAYDRAAFQMRGHKAKLNFPHLIGSDTKSEPMRMVVASKWEPCSDECHVSNKRKNVMNLLNRLARNRSQVL* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0943 178 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 1 176 - -
Lan1g0943 178 SUPERFAMILY DNA-binding domain 69 128 IPR016177 GO:0003677
Lan1g0943 178 SMART rav1_2 69 133 IPR001471 GO:0003700|GO:0006355
Lan1g0943 178 Gene3D AP2/ERF domain 68 128 IPR036955 GO:0003700|GO:0006355
Lan1g0943 178 Pfam AP2 domain 69 120 IPR001471 GO:0003700|GO:0006355
Lan1g0943 178 PANTHER DNA-BINDING DOMAIN 1 176 IPR044808 GO:0003700|GO:0009873
Lan1g0943 178 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Lan1g0943 178 PRINTS Ethylene responsive element binding protein signature 109 129 IPR001471 GO:0003700|GO:0006355
Lan1g0943 178 ProSiteProfiles AP2/ERF domain profile. 69 127 IPR001471 GO:0003700|GO:0006355
Lan1g0943 178 CDD AP2 68 129 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0943 Lan-Chr1 20103384 20104136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0943 69 141 AP2-EREBP Transcription Factor Family AT2G44840 80.822 6.75e-39 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan1g0943 AP2 1.4e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0943 K09286 - gmx:100805648 214.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0105 12 1199823 1202403 Lan1g0943 1 20103384 20104136 LSH