Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0928 ATGCCTCCAAGAACGGTGAAGAGAGGTGGTTCAGCCAGTGGTGGAAAAAGGGGCGGAAGAGGAAGCAAGGTGACTCCAACAAAATCTGCACAGAAGGAGCAGCAGCAACCTGAAGAAGTTGTGAAGGTTGAAGAAGAAAAGCTGATTATTGAGGAAGAATCGAAGGTTGAAGATAAATCTATTGTTGTTGAGGACAAATCAATTGATATGAACCAAAAAGCTTCTGAAGATGATGAAGAAATAAAAGCAACGCATGTTTCTAATGAATTGCATGTGGTGAAAAACGATGAAGAGGAGGTTAAGGAATCTATAGATGAATATGAAAAGGATGAACGATTAGATTTAGAGGATAATGATCCGGAGTATGAACATGAGGAGTATGGTGGCGTTGATTATGATGAGAAGGAAATTGAACCAGATGAGGTTCATGAAATGGAAGAGGGAGAAGAGGAAGAACCAGAAGAGAATGTTGGTGAAGAAGAGGGTGATACTGGTGAGGAAGAAGTTGAAGACGTGCATGATGAAATAGAGGGTGAAGAGGATGATGAGCATGTTGGTGAGGAGCGTGAGCATCAAGAGATGGCTGATGTGGAGGAAGAACATCGCGAAGTTGTAAAAGAGAGGCGGAAGCGGAAAGAATTTGAAGTGTTTGTTGGAGGGCTAGATAAGGATGCTACAGAAGATGATCTGAAGAAGGTTTTCAGTGTTGTTGGGGTGGTTACCGAAGTCAGGCTGATGATGAACCCTCAGACTAAAAAGAACAAGGGATTTGCATTCTTGCGTTTTGAAACTGTCGAACAAGCAAAAAGAGCTGTAGCTGAGCTAAAAAATCCAGTGATTAATGGCAAACAATGTGGTGTTACTCCTAGTCAGGACAGCGATACTCTCTATTTGGGTAACATATGCAAGACATGGACAAAGGAAGCTTTAAAGGAGAAGTTGAAACATTATGGAGTTACAAATGTTGAGGATGTGACATTAGTAGAAGATAATAATGATAAAGGAATGAACCGTGGCTTTGCATTTTTGGAATTTTCCTCCCGCTCAGAAGCTATGGATGCCTTTAAGCGACTTCAGAAGAGAGATATTGTATTTGGAGTTGATAAGCCTGTAAAGGTTTCCTTTGCGGATTCCTTTATTGATCCGGGTGATGAAATTATGGCACAGGTTAAAACTGTGTTTATTGATGCTCTGCCTCCTTCGTGGGATGAAGATTATGTCCGGGATCTTCTTAAAAAATATGGGGAGATTGAAAAGATTGAACTTGCCAGGAATATGCCAGCTGCTCGCAGGATGGATTATGGATTTATTACATTTGGCACACATGATGCTGCTGTAAGGTGTGCTGAAAGCATCACCGGCACAGAGTTGGGGGAAGGTGACAAGAAGGCAAAAGTTAGGGCTAGATTGTCAAGACCACTTCAGAGAGGCCGTGGAAGATATATTAGTCGTGGGGACTACCGTCCTAGTCGCGGATCTGGATTAATGTCAAGGCCTTCATGGAGCCGACCTGCACCACGTAGTTTTCCTCCTCCCCGTGGGGTAAGAGGAATTGGAAGTCGTCTTCCACCTGTCAGGCCTATTAGTATGAGAGCAAGAAGTAGGCCAATAGATCCTCCAGCTAGATCCTATGATAGGAGACAGGCTGCTCCTGCATATCCAAAAAGTAGCATGAAGAGAGATTATGGTCGTCGTGAGGATCTACCACCTCCAAGAAGAGTTGCTGCAGATTATGGCTCGAGAGTGGTTTCTGAAAGACGCCCATCTTACAGGGATTACCCAGCTCGTGGCCCTAGCTACTCTGATCTCCCAAGAAGTACATATCGTGCTGCACCAAGGAGAGGTTATGTGGATGATGGCTATGGCCAAAGGTTTGAGAGGCCTCCTCCTCCACCTCCTCCTCCCCATCCAAGTTACCGTGAAGGACGACCTCGTGATTATGATAGTCTGTCTGGTTCAAAACGTTCTTATGCTGCCATAGATGATGTTCCTCCAAGGTATGCTGATACTGGTGCTCGCCAATCAAGAGCTCGATTGGACTATGAATATGGTGGTAGTGCTTCACAGTATGAGGATGCTTATGGTGATAGTAGACTTGGAAGATCTAGTCTGGGATATGGCAGCAGTAGCAGAAATTCTATTTCTAGTCAAGATTCACATGGAATGTATAGCAGTCGACATGGTGTCAGTTACAGTGGAGGCTCTTTTGGTGGTAGTGATGGTACTGGCATGTACTCGTCAAGTTATGGTGGTGATTACATCTCTCGTGGAAGTGATGTTGGTGGCAGCTCTTATTCATCAATGTATTCTGGCAGGGGTACGGGTAGTGGTAGCAGCTACATGAGTGGTGGTGGATCTGGGTCTTATTATTGA 2373 0.4429 MPPRTVKRGGSASGGKRGGRGSKVTPTKSAQKEQQQPEEVVKVEEEKLIIEEESKVEDKSIVVEDKSIDMNQKASEDDEEIKATHVSNELHVVKNDEEEVKESIDEYEKDERLDLEDNDPEYEHEEYGGVDYDEKEIEPDEVHEMEEGEEEEPEENVGEEEGDTGEEEVEDVHDEIEGEEDDEHVGEEREHQEMADVEEEHREVVKERRKRKEFEVFVGGLDKDATEDDLKKVFSVVGVVTEVRLMMNPQTKKNKGFAFLRFETVEQAKRAVAELKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDVTLVEDNNDKGMNRGFAFLEFSSRSEAMDAFKRLQKRDIVFGVDKPVKVSFADSFIDPGDEIMAQVKTVFIDALPPSWDEDYVRDLLKKYGEIEKIELARNMPAARRMDYGFITFGTHDAAVRCAESITGTELGEGDKKAKVRARLSRPLQRGRGRYISRGDYRPSRGSGLMSRPSWSRPAPRSFPPPRGVRGIGSRLPPVRPISMRARSRPIDPPARSYDRRQAAPAYPKSSMKRDYGRREDLPPPRRVAADYGSRVVSERRPSYRDYPARGPSYSDLPRSTYRAAPRRGYVDDGYGQRFERPPPPPPPPHPSYREGRPRDYDSLSGSKRSYAAIDDVPPRYADTGARQSRARLDYEYGGSASQYEDAYGDSRLGRSSLGYGSSSRNSISSQDSHGMYSSRHGVSYSGGSFGGSDGTGMYSSSYGGDYISRGSDVGGSSYSSMYSGRGTGSGSSYMSGGGSGSYY* 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0928 790 MobiDBLite consensus disorder prediction 457 674 - -
Lan1g0928 790 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 292 IPR000504 GO:0003723
Lan1g0928 790 MobiDBLite consensus disorder prediction 1 42 - -
Lan1g0928 790 MobiDBLite consensus disorder prediction 93 108 - -
Lan1g0928 790 MobiDBLite consensus disorder prediction 558 572 - -
Lan1g0928 790 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 391 473 IPR000504 GO:0003723
Lan1g0928 790 Gene3D - 132 294 IPR012677 -
Lan1g0928 790 SMART rrm1_1 295 374 IPR000504 GO:0003723
Lan1g0928 790 SMART rrm1_1 215 288 IPR000504 GO:0003723
Lan1g0928 790 SMART rrm1_1 392 467 IPR000504 GO:0003723
Lan1g0928 790 SUPERFAMILY RNA-binding domain, RBD 292 380 IPR035979 GO:0003676
Lan1g0928 790 CDD RRM_SF 393 467 - -
Lan1g0928 790 Coils Coil 90 113 - -
Lan1g0928 790 MobiDBLite consensus disorder prediction 764 790 - -
Lan1g0928 790 Gene3D - 295 377 IPR012677 -
Lan1g0928 790 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 790 - -
Lan1g0928 790 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 378 IPR000504 GO:0003723
Lan1g0928 790 MobiDBLite consensus disorder prediction 93 204 - -
Lan1g0928 790 SUPERFAMILY RNA-binding domain, RBD 215 458 IPR035979 GO:0003676
Lan1g0928 790 Coils Coil 187 207 - -
Lan1g0928 790 PANTHER RNA RECOGNITION MOTIF 1 790 - -
Lan1g0928 790 MobiDBLite consensus disorder prediction 705 726 - -
Lan1g0928 790 MobiDBLite consensus disorder prediction 67 86 - -
Lan1g0928 790 MobiDBLite consensus disorder prediction 109 184 - -
Lan1g0928 790 Gene3D - 383 498 IPR012677 -
Lan1g0928 790 MobiDBLite consensus disorder prediction 185 204 - -
Lan1g0928 790 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 393 458 IPR000504 GO:0003723
Lan1g0928 790 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 362 IPR000504 GO:0003723
Lan1g0928 790 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 284 IPR000504 GO:0003723
Lan1g0928 790 CDD RRM_SF 296 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0928 Lan-Chr1 19984692 19989407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0928 194 458 Eukaryotic Initiation Factors Gene Family AT3G16380 25.623 2.27e-16 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0928 - - gmx:100779340 1029.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0088 12 976269 981678 Lan1g0928 1 19984692 19989407 LSH