Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0891 ATGATGGGTCCAAATAAACAAGCGGAACAATTGAGAATTGATGGAAACACTTACTTCAACAAACACCGTTTTGGTGCTGCCATTGATGCTTATACTCAGGCAATTACGTTATGCCCCAATGTTTCTGTCTATTGGACCAATCGTGCTCTCTGCCACCTTAAACGCAATGATTGGGAGAGAGTAGAAGAAGATTGTCGGAAAGCAATTCAGCTGGACAACAATTTGGTAAAGGCTCACTATATGTTGGGACTTGCATTGCTAAAGCGAGAGGAATATACCAAGGGAATCAGAGAGTTGCAGAAGGCTTTGGATCTTGGAAGAGGTGCTGATCCCAAGGGCTATATGGTAGAAGAAATATGGCAAGAGCTTGCTAAAGCAAAATACTTAGAATGGCAACATTCATCGACCAAACGATCGAGTGATTTGCAAAGCTTGAAAGAAGCTTGTGAGTCTGCTCTAAAGGAAAAACAGTTTCATGATATGTCCCAAATGGAAGGATTTGTAGATGATGTTACTATTGCTCATGTGGAACAATTAGAGGCTTTAAGAGAAGTCTTCAATAAAGCTGCAGAGGATGACATACCAACTGAGATACCAGACTATCTGTGCTGTAAAATCACGCTAGATATTTTTCATGATCCGGTAATCACTCCAAGTGGACATACATATGAGAGGGCAGTGATTCTTGAGCATCTCAAGAAGGTGGGTAAATTTGACCCGTTTACGCGGCAACCGCTTCAGCCATCGCAACTAGTACCGAACTTGGCCATTAAAGAAGCTGTTCAGGCATTTCTGGACAAACATGGGTGGGCCTACAAGGTAGATTAA 828 0.4215 MMGPNKQAEQLRIDGNTYFNKHRFGAAIDAYTQAITLCPNVSVYWTNRALCHLKRNDWERVEEDCRKAIQLDNNLVKAHYMLGLALLKREEYTKGIRELQKALDLGRGADPKGYMVEEIWQELAKAKYLEWQHSSTKRSSDLQSLKEACESALKEKQFHDMSQMEGFVDDVTIAHVEQLEALREVFNKAAEDDIPTEIPDYLCCKITLDIFHDPVITPSGHTYERAVILEHLKKVGKFDPFTRQPLQPSQLVPNLAIKEAVQAFLDKHGWAYKVD* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0891 275 Gene3D Tetratricopeptide repeat domain 3 138 IPR011990 GO:0005515
Lan1g0891 275 CDD RING-Ubox_CHIP 198 264 IPR045202 -
Lan1g0891 275 SUPERFAMILY RING/U-box 191 272 - -
Lan1g0891 275 ProSiteProfiles U-box domain profile. 197 271 IPR003613 GO:0004842|GO:0016567
Lan1g0891 275 ProSiteProfiles TPR repeat profile. 8 41 IPR019734 GO:0005515
Lan1g0891 275 Pfam U-box domain 198 270 IPR003613 GO:0004842|GO:0016567
Lan1g0891 275 PANTHER CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN-RELATED 5 274 - -
Lan1g0891 275 Pfam Tetratricopeptide repeat 15 40 IPR019734 GO:0005515
Lan1g0891 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 274 IPR013083 -
Lan1g0891 275 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 5 274 IPR045200 GO:0000209|GO:0061630
Lan1g0891 275 SUPERFAMILY TPR-like 6 108 IPR011990 GO:0005515
Lan1g0891 275 Pfam Anaphase-promoting complex, cyclosome, subunit 3 42 101 - -
Lan1g0891 275 ProSiteProfiles TPR repeat profile. 76 109 IPR019734 GO:0005515
Lan1g0891 275 SMART Ubox_2 201 264 IPR003613 GO:0004842|GO:0016567
Lan1g0891 275 SMART tpr_5 8 41 IPR019734 GO:0005515
Lan1g0891 275 SMART tpr_5 42 75 IPR019734 GO:0005515
Lan1g0891 275 SMART tpr_5 76 109 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0891 Lan-Chr1 19707618 19711979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0891 8 274 U-box Gene Family AT3G07370 67.790 4.33e-138 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0891 K09561 - gmx:100796519 467.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0045 12 398311 414270 Lan1g0891 1 19707618 19711979 LSH