Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0889 ATGGGTATTTCCAGGGATTCTATGCACAAGAGGCGTGCCACTGGTGGCAAGAAGAAGGCATGGAGGAAGAAGAGAAAGTATGAGCTCGGTCGCCAGCCAGCTAACACTAAGCTTTCGAGCAACAAGACAGTTAGGAGGATCCGTGTTAGAGGTGGCAATGTGAAATGGAGGGCACTGAGGTTGGATACTGGAAATTTCTCATGGGGTAGTGAGGCTGTAACTCGCAAGACTCGTTTGCTAGATGTGGTTTACAATGCCTCAAACAATGAGCTTGTGCGAACTCAGACCCTTGTCAAGGGTGCTATTGTACAAGTTGATGCTGCTCCGTTCAAGCAGTGGTACCTTCAGCACTATGGTGTCGAAGTTGGCAGGAAGAAGAAAGTAGCCGCTAAGAAGGACACCACAGAGGAGAGTGAAGCCACTGCAGAAGAAGCCAAGAAAAGTAATCATCTGCAGCGCAAAATTGAGAAGCGCCAGAAAGATCGTACTCTTGATGCTCACATTGAAGAGCAGTTTGGTGGTGGGAGATTGCTAGCTTCCATCTCATCTCGACCCGGTCAATGTGGCAGAGCTGATGGCTACATTCTGGAAGGTAAGGAGCTGGAATTTTATTTGAAGAAACTTCAGAAGAAGAAGGGAAAAGGTGCTGCTGCTTGA 657 0.4795 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKGAIVQVDAAPFKQWYLQHYGVEVGRKKKVAAKKDTTEESEATAEEAKKSNHLQRKIEKRQKDRTLDAHIEEQFGGGRLLASISSRPGQCGRADGYILEGKELEFYLKKLQKKKGKGAAA* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0889 218 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Lan1g0889 218 PANTHER 40S RIBOSOMAL PROTEIN S8 1 217 - -
Lan1g0889 218 PANTHER 40S RIBOSOMAL PROTEIN S8 1 217 IPR001047 GO:0003735|GO:0005840|GO:0006412
Lan1g0889 218 TIGRFAM eS8: ribosomal protein eS8 1 198 IPR001047 GO:0003735|GO:0005840|GO:0006412
Lan1g0889 218 MobiDBLite consensus disorder prediction 11 26 - -
Lan1g0889 218 CDD Ribosomal_S8e_like 5 196 - -
Lan1g0889 218 MobiDBLite consensus disorder prediction 129 162 - -
Lan1g0889 218 Gene3D - 32 160 - -
Lan1g0889 218 Gene3D - 161 214 - -
Lan1g0889 218 MobiDBLite consensus disorder prediction 1 39 - -
Lan1g0889 218 Pfam Ribosomal protein S8e 5 196 IPR022309 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0889 Lan-Chr1 19691088 19693517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0889 1 205 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 82.439 4.00e-124 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0889 K02995 - gmx:100500112 360.533