Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0866 ATGAAGTCTGCTATGGCTCAAAGCAACTGGGAAGCCGATAAAATGCTCGATGTTTACATTCATGATTATCTCCTAAAAAGAAAATTACATGCCTCTGCAAAAGCTTTTATGACGGAAGGGAAAGTTGCCACAGATCCAGTTGCAATTGATGCGCCTGGGGGATTTCTTTTTGAGTGGTGGTCTGTATTCTGGGACATATTCATTGCAAGGACAAACGACAAACATTCTGAGCCTGCTGCAGCTTACATTCAGACCCAGCAAATGAAGGCCAGGGAACAACTTCAAATACAACAACTGCAACTAATGCAGCAGCGCAGTGCTCAGTTACAACGAAGAGATCCTAATCATGGCGCACTCGGTGGTTCCTTAAATGCTATGAACTCCGAGGGAATGTTGGGTCAGCCGCCAGCAACTGTGTTGGCCATGAAAATGTACGAAGAACGAATGAAGCACTCTCATTCAATGGATTCCGAGGCGTCCCCAGCTCTTATGGATGGCAACAGGATGGCTCTCCTCAAATCAGGAACCAGCAATCAAGGCCAGTTGGTTCAAGGCAATTCGGGGAATATGCCGACTGCGTTGCAGCAAATTCAGGACATGAAAGGAGAAGTCGGCTTAGGTGGCATTCCGAAGAGTTTGCCAATGGATACATCAGTCTACCGACAAGCAATTCTACAGTCCAAATCTGGGCTAAGCGGTGCAGGATTAAATCAAGGAGTTACGGGTCTTCCACTAAAAGGGTGGCCTCTAACTGGAATTGATCAACTGCGACCTGGTTTGGGTGTACAAGTTCAGAAGCCGAATTTGACACCCCAGAACCAATTTCTTCTGACATCACAACAGCAGCAGGTCTTGGCACAGGCTCAGGCACAAAACAGCCTTGGGAACTCAGCTAATTTTGGTGATATGGATCCACGTAGACTTAGTGGTGTTCCTCGAGGTAGCTTGAGTGCAAAGGACGGCCAGTCCACCAGGAATGAGGGATCTATGTGCTCTCAAGTTCAATCAGGCTCACCTAAGCAGATGAAGATTGCTCAGATGCAACATTCTTCATCTCAGCAGCAGGAGCAAATACAGCAGCAGCAAATGCAGCAGAGTAACAGAAAAAGAAAGCAGCCTTCTAATTCCGGAGCGGCAAATAGCACTGGCACTGGAAACACAGTTGGTCCTTCACCTAGTTCACCAGCATCAACTCACACACCTGGGGATGGAATAAATACAGCCAGTAGCATGCAAAATGCTAACACTGTGCAAAAGAGCTCAATGATGTATGGTGCCGATGGTACAGGAGGCCTCGCATCATCTTCAAATGTGCTGCAGGATGACATGGACCGATTTGGAGATGTTGGTGCTTTATATGACAACGTTGAGTCTTTTTTATCAAATGATGGAGGAGATGGTGGAAATCTCTATGGAACAATAAAGCAAAGTTCCGCTGAACAGCATAAAGATTCTTCAAAAGGCTTCACCTTTGCCGAACTTGGATGCATACGAACAAGGAACAGTAAAGTTACTTGCTGTCATTTTTCTTCGGATGGAAAGTTGCTTGCCAGTGCTGGACATGACAAGAAGGTTGTCCTCTGGAACATGGACAATTTACAGACAGAGAGCACTCCTGAAGAACACAAATCAGTTATAACAGATGTCCGTTTTAGACCAAATTCCTCTCAGTTGGCGACAGCCTCAGTTGATAAATCTGTGCGACTATGGGACGCGGCCAATCCAAGCTATTGCATGCAAGAATATAGTGGACATAGTTCAGCTGTGATGTCTCTCGATTTCCACCCTAAGAAAACTGATCTTTTCTGTTTCTGTGACAATGACAATGAAATTCGTTATTGGAATATTACTTCATCCTCATGCACCCGTGTATCTAAGGGAGGCAACGCACAAGTGAGGTTTCAGCCCAGAGTGGGACGTTTTTTGGCAGCAGCATCTGATAAACTAGTTTCAATTTTTGATGTGGAAACCGATAGACAAATATACTCATTCCAGGGTCATCCGGAAATAGTTAATTATATTTGTTGGGACGCAAATGGTGATATCTTGGCCTCTGTGAGTCAGAATTTGGTGAAGGTTTGGTCAATGACTTCAGGAGAATGCATTCAGGAACTTATCTCCACTAACAACCAGTTTCATTCCTGTGTTTTTCATCCAAGTTACTCAACTTTGTTAGTTATTGGTGGGACTTCGTGCTTAGAACTGTGGAACATGGCTGAGAATAAAACGATGACAATTTCGGCGCACGAGAATATAATATCGGCTTTGGCACAGTCTCCTGTCACCGGAATGGTTGCCTCGGCGAGTCATGACAGCTCTGTCAAGTTGTGGAAATAA 2337 0.4497 MKSAMAQSNWEADKMLDVYIHDYLLKRKLHASAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFWDIFIARTNDKHSEPAAAYIQTQQMKAREQLQIQQLQLMQQRSAQLQRRDPNHGALGGSLNAMNSEGMLGQPPATVLAMKMYEERMKHSHSMDSEASPALMDGNRMALLKSGTSNQGQLVQGNSGNMPTALQQIQDMKGEVGLGGIPKSLPMDTSVYRQAILQSKSGLSGAGLNQGVTGLPLKGWPLTGIDQLRPGLGVQVQKPNLTPQNQFLLTSQQQQVLAQAQAQNSLGNSANFGDMDPRRLSGVPRGSLSAKDGQSTRNEGSMCSQVQSGSPKQMKIAQMQHSSSQQQEQIQQQQMQQSNRKRKQPSNSGAANSTGTGNTVGPSPSSPASTHTPGDGINTASSMQNANTVQKSSMMYGADGTGGLASSSNVLQDDMDRFGDVGALYDNVESFLSNDGGDGGNLYGTIKQSSAEQHKDSSKGFTFAELGCIRTRNSKVTCCHFSSDGKLLASAGHDKKVVLWNMDNLQTESTPEEHKSVITDVRFRPNSSQLATASVDKSVRLWDAANPSYCMQEYSGHSSAVMSLDFHPKKTDLFCFCDNDNEIRYWNITSSSCTRVSKGGNAQVRFQPRVGRFLAAASDKLVSIFDVETDRQIYSFQGHPEIVNYICWDANGDILASVSQNLVKVWSMTSGECIQELISTNNQFHSCVFHPSYSTLLVIGGTSCLELWNMAENKTMTISAHENIISALAQSPVTGMVASASHDSSVKLWK* 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0866 778 SUPERFAMILY WD40 repeat-like 494 778 IPR036322 GO:0005515
Lan1g0866 778 ProSiteProfiles Trp-Asp (WD) repeats profile. 746 778 IPR001680 GO:0005515
Lan1g0866 778 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 497 532 - -
Lan1g0866 778 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 6 778 IPR044716 GO:0003714
Lan1g0866 778 CDD WD40 501 778 - -
Lan1g0866 778 Gene3D - 471 630 IPR015943 GO:0005515
Lan1g0866 778 ProSiteProfiles Trp-Asp (WD) repeats profile. 664 704 IPR001680 GO:0005515
Lan1g0866 778 PRINTS G protein beta WD-40 repeat signature 516 530 IPR020472 -
Lan1g0866 778 PRINTS G protein beta WD-40 repeat signature 558 572 IPR020472 -
Lan1g0866 778 PRINTS G protein beta WD-40 repeat signature 765 778 IPR020472 -
Lan1g0866 778 ProSiteProfiles Trp-Asp (WD) repeats profile. 497 538 IPR001680 GO:0005515
Lan1g0866 778 ProSitePatterns Trp-Asp (WD) repeats signature. 516 530 IPR019775 -
Lan1g0866 778 ProSiteProfiles Trp-Asp (WD) repeats profile. 582 624 IPR001680 GO:0005515
Lan1g0866 778 ProSiteProfiles Trp-Asp (WD) repeats profile. 539 571 IPR001680 GO:0005515
Lan1g0866 778 SMART Lish 12 44 IPR006594 GO:0005515
Lan1g0866 778 Pfam LisH 14 40 IPR006594 GO:0005515
Lan1g0866 778 Gene3D - 631 778 IPR015943 GO:0005515
Lan1g0866 778 MobiDBLite consensus disorder prediction 316 409 - -
Lan1g0866 778 ProSiteProfiles LIS1 homology (LisH) motif profile. 12 44 IPR006594 GO:0005515
Lan1g0866 778 Pfam WD domain, G-beta repeat 502 529 IPR001680 GO:0005515
Lan1g0866 778 Pfam WD domain, G-beta repeat 742 778 IPR001680 GO:0005515
Lan1g0866 778 Pfam WD domain, G-beta repeat 578 615 IPR001680 GO:0005515
Lan1g0866 778 Pfam WD domain, G-beta repeat 660 695 IPR001680 GO:0005515
Lan1g0866 778 Pfam WD domain, G-beta repeat 537 571 IPR001680 GO:0005515
Lan1g0866 778 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 746 778 - -
Lan1g0866 778 SMART WD40_4 490 529 IPR001680 GO:0005515
Lan1g0866 778 SMART WD40_4 532 571 IPR001680 GO:0005515
Lan1g0866 778 SMART WD40_4 575 615 IPR001680 GO:0005515
Lan1g0866 778 SMART WD40_4 739 778 IPR001680 GO:0005515
Lan1g0866 778 SMART WD40_4 618 654 IPR001680 GO:0005515
Lan1g0866 778 SMART WD40_4 657 695 IPR001680 GO:0005515
Lan1g0866 778 SMART WD40_4 698 737 IPR001680 GO:0005515
Lan1g0866 778 MobiDBLite consensus disorder prediction 295 409 - -
Lan1g0866 778 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 539 571 - -
Lan1g0866 778 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 6 778 - -
Lan1g0866 778 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 582 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0866 Lan-Chr1 19487715 19495709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0866 576 777 Miscellaneous Gene Families AT5G08390 22.705 6.70e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lan1g0866 WD40 0.0098 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0866 - - qsu:111995984 1219.53