Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0865 ATGGAGAATTACGAAACGATCGATGACGAAAACGAACATCAAAATATCTTCGAATCCTTCGTTTGCTGTGTTTGCCTGGATCTCTTATACAAGCCCATTGTACTATCTTGTGGTCATGTATCCTGTTTCTGGTGTGTCCATAAATCAATGGACGGTCTGCGTGAGTCTCATTGCCCAATTTGTAGGAATTCGTATTATTACTTTCCTACAATCTGTCAAATGCTTCACTTTTTGCTTTTTAAGATCTATCCTGATGCTTACAAGAGAAGGGAAAATCGGATGCTTGAGGAAGAAAAGAAATCAGGCCTTTTCTCCCCTCAATTTGATGCTTATACATGTGAATCACAAGCTAAATGTTTGCCTTCCTGCACTACTGTAAATATGAGTGTGGAATCTTTCGAATGCATGGAGAAATCAGAGTCTGCAACTCATGAAGGAGATAAAGGTACCCTCTATCCTGAGCACTCTTTCGAGAGAACACAGGAAGTTATTAGGATTCCTGTTGAAGGAGAAAACTTGCCTCAGGATGAGGATGATCAGCAACAGCGAATATCAGTTGCAGATGTGATGTGTATGACATGCAAGCAACTGCTCTTTCGTCCTGTTGTTCTCAATTGTGGTCATGTATACTGTGAAACTTGCCTCGTCAACTTAGCTGTTGAAGTGCTTAAATGTGAAGTCTGTCAAAGTCAACATCCAAAAGGATTTCCAAAAGTTTGCTTGGCACTTGATCACTTTTTGGAGGAACAATTTCCAGAACAGTATGCAAAGCGAAGAGATGCAGTTCAACTTAGCCAACTCAAAGTCAAACCTGATACCACATCTTGTTCACTGGATAATAGTAAAGGTGAGAAGATAGGATGGTGGAGGTCTGATCCTGGTTTGAAAGTTCATTCAGGAGTTGGTTGTGATTTTTGCGGGATGTATCCGATAATTGGGGATAGATATAGATGCATGGACTGTAAGGAGATGATTGGTTTTGATCTTTGTGGCGATTGCTATAACACCCGCTCAAAGCGTCCAGGCCGTTTCAATCAGCAGCACACCCCGGAACACAAATTCCAGCTCATACAAGGTTATGGGATAGTTAGGGAACAGTTATTTGGACAAGAGTCTTCATGGAATGTAGAATTTATACCCGAAGAACTGACTCGGGTTGATGATGAAGATGATGAAGAAGATGACTTGAATGATTGA 1197 0.4094 MENYETIDDENEHQNIFESFVCCVCLDLLYKPIVLSCGHVSCFWCVHKSMDGLRESHCPICRNSYYYFPTICQMLHFLLFKIYPDAYKRRENRMLEEEKKSGLFSPQFDAYTCESQAKCLPSCTTVNMSVESFECMEKSESATHEGDKGTLYPEHSFERTQEVIRIPVEGENLPQDEDDQQQRISVADVMCMTCKQLLFRPVVLNCGHVYCETCLVNLAVEVLKCEVCQSQHPKGFPKVCLALDHFLEEQFPEQYAKRRDAVQLSQLKVKPDTTSCSLDNSKGEKIGWWRSDPGLKVHSGVGCDFCGMYPIIGDRYRCMDCKEMIGFDLCGDCYNTRSKRPGRFNQQHTPEHKFQLIQGYGIVREQLFGQESSWNVEFIPEELTRVDDEDDEEDDLND* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0865 398 ProSiteProfiles Zinc finger ZZ-type profile. 298 362 IPR000433 GO:0008270
Lan1g0865 398 CDD RING-HC 22 61 - -
Lan1g0865 398 Pfam RING-type zinc-finger 191 215 IPR027370 -
Lan1g0865 398 ProSiteProfiles Zinc finger RING-type profile. 191 229 IPR001841 -
Lan1g0865 398 Pfam Zinc finger, C3HC4 type (RING finger) 21 64 - -
Lan1g0865 398 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRT1-LIKE 9 367 - -
Lan1g0865 398 ProSitePatterns Zinc finger RING-type signature. 206 215 IPR017907 -
Lan1g0865 398 Pfam Zinc finger, ZZ type 298 339 IPR000433 GO:0008270
Lan1g0865 398 SMART ring_2 22 61 IPR001841 -
Lan1g0865 398 SMART ring_2 191 228 IPR001841 -
Lan1g0865 398 Gene3D - 294 358 IPR043145 -
Lan1g0865 398 ProSiteProfiles Zinc finger RING-type profile. 22 62 IPR001841 -
Lan1g0865 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 275 IPR013083 -
Lan1g0865 398 SUPERFAMILY RING/U-box 11 71 - -
Lan1g0865 398 CDD ZZ_PCMF_like 301 357 - -
Lan1g0865 398 SUPERFAMILY RING/U-box 186 231 - -
Lan1g0865 398 PANTHER UNCHARACTERIZED 9 367 - -
Lan1g0865 398 SUPERFAMILY RING/U-box 289 357 - -
Lan1g0865 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 90 IPR013083 -
Lan1g0865 398 SMART zz_5 297 343 IPR000433 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0865 Lan-Chr1 19474474 19480982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0865 11 62 C3H Transcription Factor Family AT1G74990 37.736 2.75e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0865 - - aprc:113868764 528.094