Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0857 ATGGAAGTTAAATTGTTCCAGATTTTTGTTTTGGTTATGGCGTTGCTTTCAACTTCCGCTATGGCAATCAATGAGATCAATGCGGGAATGGAGAGTTTGCAGAGATCTGAGAACTCTTCAATGGCGGAAAGGTCTGGTGATGCTTTGAATGAACATGCTGTTGATAAACCAGAGGAGATAGCATCTAATGTTGAAATGACCATTCACAATTATACAGCAAGGAGGAATCTGAATTTCTTCTCATGTGGGACTGGGAACCCAATTGATGATTGTTGGCGCTGTGACAAGCTTTGGTACGCTCGCCGAAAGCATTTGGCTAATTGTGCCATTGGCTTCGGGCGCAATGCCATTGGTGGCCGTGACGGGAGGTACTACGTCGTGAGTGACCCAGGTGATGATGACCCTGTCAACCCCAGACCAGGTACCCTCCGCCACGCCGTTATTCAGGATAGGCCCTTGTGGATTGTGTTCAAGAGGGACATGGTTATCACTTTGAAGCAAGAGCTCATCATGAATAGTTTCAAGACCATTGATGCTCGTGGTGTAAATGTGCACATTGCTTATGGTGCTTGCATTACCATCCAGTTCATCACCAATGTCATCATCCATGGCCTACATATCCATGACTGCAAGTCTACTGGCAATGCCATGGTTCGTAGCTCGCCCTCACATTATGGATGGAGGACAATGGCTGATGGGGATGGAATTTCAATCTTTGGTTCAAGCCACATTTGGATTGACCACAACTCATTGTCTAATTGCGCAGATGGCCTTATTGACGCCATTATGGGCTCAACTGCCATTACCATCTCCAACAATTTCTTCACCCACCATAATGAGGTCATGCTACTGGGTCACAGTGACACTTATGTCCGAGACAAGCAGATGCAAGTGACCATTGCCTATAACCATTTTGGGGAGGGTCTTATTCAAAGAATGCCAAGGTGCAGACATGGGTATTTCCATGTGGTAAACAATGATTATACCCACTGGGAAATGTATGCAATAGGTGGCAGTGCTAATCCAACAATTAACAGCCAGGGTAACCGTTACCTTGCGCCTCAGAACCCTTTCGCTAAGGAGGTGACACATAGAGTTGATGGAGGGGGCCAATGGAAAGGTTGGAATTGGAGATCTGAGGGAGACCTATTGCTGAATGGAGCATTTTTCACTGCTTCAGGAGTCAGAACTGCTGCTAGCTATGCCAGAGCCTCAAGTCTTGGGGCCAAATCCTCTTCTTTGGTTGGAACCCTCACTTCTGGTGCAGGTGTGCTTAACTGCCGCAGGGGCAATATGTGTTAA 1302 0.467 MEVKLFQIFVLVMALLSTSAMAINEINAGMESLQRSENSSMAERSGDALNEHAVDKPEEIASNVEMTIHNYTARRNLNFFSCGTGNPIDDCWRCDKLWYARRKHLANCAIGFGRNAIGGRDGRYYVVSDPGDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDARGVNVHIAYGACITIQFITNVIIHGLHIHDCKSTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITISNNFFTHHNEVMLLGHSDTYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYLAPQNPFAKEVTHRVDGGGQWKGWNWRSEGDLLLNGAFFTASGVRTAASYARASSLGAKSSSLVGTLTSGAGVLNCRRGNMC* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0857 433 PANTHER PECTATE LYASE 18-RELATED 32 430 IPR045032 GO:0030570
Lan1g0857 433 PRINTS Pollen allergen Amb family signature 108 125 IPR018082 -
Lan1g0857 433 PRINTS Pollen allergen Amb family signature 132 157 IPR018082 -
Lan1g0857 433 PRINTS Pollen allergen Amb family signature 168 184 IPR018082 -
Lan1g0857 433 PRINTS Pollen allergen Amb family signature 232 253 IPR018082 -
Lan1g0857 433 PRINTS Pollen allergen Amb family signature 312 331 IPR018082 -
Lan1g0857 433 PRINTS Pollen allergen Amb family signature 334 353 IPR018082 -
Lan1g0857 433 PRINTS Pollen allergen Amb family signature 375 399 IPR018082 -
Lan1g0857 433 PRINTS Pollen allergen Amb family signature 404 427 IPR018082 -
Lan1g0857 433 PANTHER PECTATE LYASE 32 430 - -
Lan1g0857 433 Gene3D - 85 426 IPR012334 -
Lan1g0857 433 SMART amb_all 160 357 IPR002022 -
Lan1g0857 433 Pfam Pectate lyase 189 349 IPR002022 -
Lan1g0857 433 SUPERFAMILY Pectin lyase-like 64 428 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0857 Lan-Chr1 19405210 19410896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0857 31 433 Polysaccharide Lyase AT4G13710 75.728 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0857 K01728 - gmx:100809277 772.696