Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0839 ATGGTGACTCAGAACTTGAACTTGGAACCTGAAAACAATTCAGAAGAATGCAGCCAAGAAGCTTCTAATATACCCATGCATGAAACACCCTATGATCTTAATCTTACCCTCAACTTAACACTCAATTTCAACTCAAATGATGTTAAGTTCAAAGGTACAAGTGACACTAGCACCAATATAGGAGCATCAGCATCAGCATCAGCATCAGAAACTCCTAGAGTTTTCTCTTGTAACTATTGCAGGAGGAAATTCTTTAGCTCACAAGCATTAGGGGGTCATCAGAATGCACACAAAAGAGAACGGACGATGGCGAAGCGCGCGATGAGGATGGGAATGTTCAATGAGAGGTATACAAACTTGGCATCTCTACCTCTTAAAGGTTCACCTTTTAGGTCTCTTGGTATTGAAGCTCATTCTGCAATGCACCAAAGATATATGCAAATGCCATCATCACTAGTAAGGGCTCATGATATGAAAGCTGGTGCTAAGTTTGAGAGAAACCATTTTGCATCACCAATTTTCATGGCAGATGATGATGTTAATCTATTTTGGCCTGGTAGTTTCAGAAGAGTGGATCAGGGAACTTGTGTTAATCTTGGACATGCTCAAACTTCAAATACTAGTTTTGTTCCAATGACACTTCCTCCACCACAAACTTCTTCATCGCCGGATCTTACTCTGAAGCTTTAG 690 0.4058 MVTQNLNLEPENNSEECSQEASNIPMHETPYDLNLTLNLTLNFNSNDVKFKGTSDTSTNIGASASASASETPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRAMRMGMFNERYTNLASLPLKGSPFRSLGIEAHSAMHQRYMQMPSSLVRAHDMKAGAKFERNHFASPIFMADDDVNLFWPGSFRRVDQGTCVNLGHAQTSNTSFVPMTLPPPQTSSSPDLTLKL* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0839 229 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Lan1g0839 229 SUPERFAMILY beta-beta-alpha zinc fingers 73 103 IPR036236 -
Lan1g0839 229 PANTHER ZINC FINGER PROTEIN JAGGED 6 229 IPR045320 GO:0003700
Lan1g0839 229 MobiDBLite consensus disorder prediction 1 21 - -
Lan1g0839 229 PANTHER ZINC FINGER PROTEIN 3-RELATED 6 229 - -
Lan1g0839 229 MobiDBLite consensus disorder prediction 208 229 - -
Lan1g0839 229 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 102 IPR013087 -
Lan1g0839 229 Gene3D Classic Zinc Finger 51 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0839 Lan-Chr1 19169028 19176284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0839 69 229 C2H2 Transcription Factor Family AT1G66140 44.385 3.22e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan1g0839 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0839 - - gmx:100775305 314.309